View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14929_low_12 (Length: 281)
Name: NF14929_low_12
Description: NF14929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14929_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 4558670 - 4558915
Alignment:
| Q |
20 |
cagcatgtggttttttatcactcatttttgagtttttgtgtttgaatgttgagctaagggaagccaatggtttaataaagataaagccaatgtttcttgg |
119 |
Q |
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| T |
4558670 |
cagcatgtggttttttatcactcatttttgagtttttgtgtttgaatgttgagctaagggaagccaatggtttaataaagataaagccaatgtttcttgg |
4558769 |
T |
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| Q |
120 |
atttgtgtaaaagaagataagagacaaaagacaaggaaagcaaactcaaattctaaggaatatgtaacacaataattgatacatacttgtcaagtcacca |
219 |
Q |
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| T |
4558770 |
atttgtgtaaaagaagataagagacaaaagtcaaggaaagcaaactcaaattctaagtaatatgtaacacaataattgatacatacttatcaagtcacca |
4558869 |
T |
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| Q |
220 |
ctttttgttatagaaggaaaacaatttttcattaaaaagtttattg |
265 |
Q |
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| T |
4558870 |
ctttttgttatagaaggaaaacaatttttcattaaaaagtttattg |
4558915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 4572511 - 4572660
Alignment:
| Q |
20 |
cagcatgtggttttttatcactcatttttgagtttttgtgtttgaatgttgagctaagggaagccaatggtttaataaagataaagccaatgtttcttgg |
119 |
Q |
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| T |
4572511 |
cagcatgtggttttttatcactcattattgagtttttgtgtttgaatgttgagctaa-ggaaaccaatgttttaataaagataaatccaatgtttcttgg |
4572609 |
T |
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| Q |
120 |
atttgtgtaaaagaagataagagacaaaagacaaggaaagcaaactcaaatt |
171 |
Q |
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| T |
4572610 |
atttgtggaaaagaagat-agagacaaaagacaaggaaagcaaaatcaaatt |
4572660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 186 - 263
Target Start/End: Original strand, 4572706 - 4572788
Alignment:
| Q |
186 |
acacaataattgatacatacttgtcaagtcaccactttttgtt-----atagaaggaaaacaatttttcattaaaaagtttat |
263 |
Q |
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| T |
4572706 |
acacaataattgatgcatactagtcaagtcaccactttttgttacgtgagagaaggaaaacaatttttcattaaaaagtttat |
4572788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 4587177 - 4587260
Alignment:
| Q |
20 |
cagcatgtggttttttatcactcatttttgagtttttgtgtttgaatgttgagctaagggaagccaatggtttaataaagataaag |
105 |
Q |
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| T |
4587177 |
cagcatgaggttttgaatcactcatttctgagttt--gtgtttgaattttgagcaaagggaagccaatggtttaatagagataaag |
4587260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 4587258 - 4587310
Alignment:
| Q |
211 |
aagtcaccactttttgttatagaaggaaaacaatttttcattaaaaagtttat |
263 |
Q |
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| T |
4587258 |
aagtgaccactttttgttataaaaggaaatcaatttttcattaaaaagtttat |
4587310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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