View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14929_low_2 (Length: 590)
Name: NF14929_low_2
Description: NF14929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14929_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 19 - 588
Target Start/End: Original strand, 29634012 - 29634578
Alignment:
| Q |
19 |
aatttagccatactcaattattaaccataaattaactcgaggaccaattccaccgtcatttagcatactgttataggataaaatatttggattaatacag |
118 |
Q |
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| T |
29634012 |
aatttagccatactcaattattaaccataaattaactcgaggaccaattccaccgtcatttagcatactgttataggataaaatatttggattaatacag |
29634111 |
T |
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| Q |
119 |
attcagtataaaaacgatacaacttaggattgctaaagaactttcccctaggaatcggagaatcaacaaaacnnnnnnnntgaaggcttttaattagatc |
218 |
Q |
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| T |
29634112 |
attcagtataaaaatgatacaacttaggattactaaagtactttcccctaggaatcggagaatcaacaaaa---aaaaaattaatgcttttaattagatc |
29634208 |
T |
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| Q |
219 |
aattctttaataccagtacttcgaatgaattgttctcgaagcttggaccactcagcttcaatattatctcgtgttttacccgccaaatcctgctcagttt |
318 |
Q |
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| T |
29634209 |
aattctttaataccagtacttcgaatgaattgttctcgaagcttggaccactcagcttcaatattatctcgtgttttacccgccaaatcctgctcagttt |
29634308 |
T |
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| Q |
319 |
tcagccttggaacattgatcatcaaatcatctctttttgctttcacttctcttcctttctggtacaattccatctttctcttacgaaacatgtctcttct |
418 |
Q |
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| T |
29634309 |
tcagccttggaacattgatcatcaaatcatctctttttgctttcacttctcttcctttctggtacaattccatctttctcttacaaaacatgtctcttct |
29634408 |
T |
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| Q |
419 |
ttttgtagacactttaatatcagcatctagggttttaattttctcttcaagcattctcttctcttcctccaagcaaaccaatttatttgacaaacacgtt |
518 |
Q |
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| T |
29634409 |
ttttgtagacactttaatatcagcatctagggttttaattttctcttcaagcattctcttctcttcctgcaagcaaaccaatttatttgacaaacacgtt |
29634508 |
T |
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| Q |
519 |
tcttccttctcaatattacagaactcttgaacattagtgtcgagatcattcatcacttcacttgcctttg |
588 |
Q |
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| T |
29634509 |
tcttccttctcaatattacggaactcttgaacattagtgtcgagatcattcatcacttcacttgcttttg |
29634578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 29438554 - 29438610
Alignment:
| Q |
237 |
cttcgaatgaattgttctcgaagcttggaccactcagcttcaatattatctcgtgtt |
293 |
Q |
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| T |
29438554 |
cttccaatgaattgttctccaagctttgaccactcttcttcaatattatcttgtgtt |
29438610 |
T |
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