View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14929_low_3 (Length: 546)
Name: NF14929_low_3
Description: NF14929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14929_low_3 |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 517; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 2 - 546
Target Start/End: Original strand, 1680034 - 1680578
Alignment:
| Q |
2 |
tcaaccgtgaaactatattcttgatcacatcccatgtatgagtcgcacatgaaataaagtatgtaagatttctttccagcatcagcaggtgcagcaaact |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1680034 |
tcaaccgtgaaactatattcttgatcacatcccatgtatgagtcgcacatgaaataaagtatgtaagatttctttccagcatcatcaggtgcagcaaact |
1680133 |
T |
|
| Q |
102 |
gcagtttggcttttaatttccgctgcaaggaaacccgcttaattgcaagtaacgagttggttttggtatcaccaacaacaagccaccatccttcctcctt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1680134 |
gcagtttggcttttaatttccgctgcaaggaaacccgcttaattgcaagtaacgagttggttttggtatcaccaacaacaagccaccatccttcctcctt |
1680233 |
T |
|
| Q |
202 |
ggcttttggatacctaggagcatcaacaggtcctatttctatcttaccgtcgatatccctctccagagtgacacatattgttataccctcaccagtccgg |
301 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
1680234 |
ggcttttggatacctaggagcatcaacaggtcctatttttgtcttaccgtcgatatccctctccagagtgacacttattgttatatcctcaccagtccgg |
1680333 |
T |
|
| Q |
302 |
acactgtcattttgcaggacttcatacgacaaatcaacattaggaaagcgattacaaaagcgagcaatgtcaaataagtatgaatttggcatgtttaaca |
401 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1680334 |
acactgtcattttgcaggacttcatactacaaatcaacattaggaaagcgattacaaaagcgagcaatgtcaaataagtatgaatttggcatgtttaaca |
1680433 |
T |
|
| Q |
402 |
attcacgccttgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccctgggttctcctcgcatttcttagccaaatcctttgtgaa |
501 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1680434 |
attcacgcctcgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccctgggttctcctcgcatttcttagccaaatcctttgtgaa |
1680533 |
T |
|
| Q |
502 |
atgaggaagttgtagcagcatagagtcacgtccccacaatccttg |
546 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1680534 |
atgaggaagttgtagcagcatagagtcacgtccccacaatccttg |
1680578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 2 - 546
Target Start/End: Complemental strand, 2800694 - 2800150
Alignment:
| Q |
2 |
tcaaccgtgaaactatattcttgatcacatcccatgtatgagtcgcacatgaaataaagtatgtaagatttctttccagcatcagcaggtgcagcaaact |
101 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
2800694 |
tcaaccgtgaaactatattcttgatcacaacccatgtatgagtcgcacatgaaaaaaagtatgtaagatttctttccagcatcaacaggtgcagcaaact |
2800595 |
T |
|
| Q |
102 |
gcagtttggcttttaatttccgctgcaaggaaacccgcttaattgcaagtaacgagttggttttggtatcaccaacaacaagccaccatccttcctcctt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2800594 |
gcagtttggcttttaatttccgctgcaaggaaacccgcttaattgcaagtaacgagttggttttggtatcaccaacaacaagccaccatccttcctcctt |
2800495 |
T |
|
| Q |
202 |
ggcttttggatacctaggagcatcaacaggtcctatttctatcttaccgtcgatatccctctccagagtgacacatattgttataccctcaccagtccgg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2800494 |
ggcttttggatacctaggagcatcaacaggtcctatttatgtcttaccgtcgatatccctctccagagtgacacatattgttataacctcaccagtccgg |
2800395 |
T |
|
| Q |
302 |
acactgtcattttgcaggacttcatacgacaaatcaacattaggaaagcgattacaaaagcgagcaatgtcaaataagtatgaatttggcatgtttaaca |
401 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2800394 |
acactgtcattttgcaggacttcatacaacaaatcaacattaggaaagcgattacaaaagcgagcaatgtcaaataagtatgaatttggcatgtttaaca |
2800295 |
T |
|
| Q |
402 |
attcacgccttgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccctgggttctcctcgcatttcttagccaaatcctttgtgaa |
501 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2800294 |
attcacgcctcgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccctgggttctcctcgcatttcttagccaaatcctttgtgaa |
2800195 |
T |
|
| Q |
502 |
atgaggaagttgtagcagcatagagtcacgtccccacaatccttg |
546 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2800194 |
atgaggaagttgtagcagcatagagtcacgtccccacaatccttg |
2800150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 8 - 546
Target Start/End: Complemental strand, 29269864 - 29269326
Alignment:
| Q |
8 |
gtgaaactatattcttgatcacatcccatgtatgagtcgcacatgaaataaagtatgtaagatttctttccagcatcagcaggtgcagcaaactgcagtt |
107 |
Q |
| |
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||||||| ||| || |||||||| |||||||| || ||||||||||| || || | || |||||||||||||||||||||||||||||||||| ||||| |
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| T |
29269864 |
gtgaaaccatactcctgatcacaacccatgtaagaatcgcacatgaagtagaggacataggatttctttccagcatcagcaggtgcagcaaactccagtt |
29269765 |
T |
|
| Q |
108 |
tggcttttaatttccgctgcaaggaaacccgcttaattgcaagtaacgagttggttttggtatcaccaacaacaagccaccatccttcctccttggcttt |
207 |
Q |
| |
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||||||| || |||||||||| || |||| ||||||||||| | | ||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
29269764 |
tggctttcaacttccgctgcagcgacacccttttaattgcaagcagcatgttggttttggtatcaccaacaacaagccaccacccttcttccttggcttt |
29269665 |
T |
|
| Q |
208 |
tggatacctaggagcatcaacaggtcctatttctatcttaccgtcgatatccctctccagagtgacacatattgttataccctcaccagtccggacactg |
307 |
Q |
| |
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|||||||||||||||||||||||||||| |||| | ||||| || | ||||| ||| |||||||| || ||||||| | || |||| || ||| || |
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| T |
29269664 |
cggatacctaggagcatcaacaggtcctacttctgttttaccttcaagatcccgctcaagagtgacctgtagtgttatatcatccccagctcgcacattg |
29269565 |
T |
|
| Q |
308 |
tcattttgcaggacttcatacgacaaatcaacattaggaaagcgattacaaaagcgagcaatgtcaaataagtatgaatttggcatgtttaacaattcac |
407 |
Q |
| |
|
|| || | ||||| || || |||| ||||| ||||||||| || || ||||| |||||||| || || | | |||| || |||||| |||||||| | |
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| T |
29269564 |
tcgttgtccaggatctcgtatgacagatcaatattaggaaaacggttgcaaaaccgagcaatatccaaaagctgagaatctgtcatgttcaacaattccc |
29269465 |
T |
|
| Q |
408 |
gccttgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccctgggttctcctcgcatttcttagccaaatcctttgtgaaatgagg |
507 |
Q |
| |
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| || || |||||||||||| ||||||||||| | |||||||||||| ||||||||||||||| |||||||||||| |||||||||||||| || || |
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| T |
29269464 |
gtctctcatcatcttccatctctaataaatcaaataccgtttctatactcctccctgggttctcctggcatttcttagctaaatcctttgtgaagtgtgg |
29269365 |
T |
|
| Q |
508 |
aagttgtagcagcatagagtcacgtccccacaatccttg |
546 |
Q |
| |
|
||| |||||||||||||| || || |||||| |||||| |
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|
| T |
29269364 |
aagctgtagcagcatagaatctcgctcccacattccttg |
29269326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 384 - 546
Target Start/End: Complemental strand, 40469833 - 40469671
Alignment:
| Q |
384 |
aatttggcatgtttaacaattcacgccttgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccctgggttctcctcgcatttctt |
483 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||| ||| || |||||||||||||||| | |
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| T |
40469833 |
aatttggcatgtttaacaattcacgcctcgcaacatcttccatctccaataaatcaaagatggcttctatactcgtccatgagttctcctcgcatttcct |
40469734 |
T |
|
| Q |
484 |
agccaaatcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccccacaatccttg |
546 |
Q |
| |
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| ||||||| |||||||| ||||||||| ||||| |||||||||| | ||||||||||||||| |
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|
| T |
40469733 |
acccaaatcttttgtgaagtgaggaagtcgtagctgcatagagtcgcatccccacaatccttg |
40469671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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