View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14929_low_8 (Length: 337)
Name: NF14929_low_8
Description: NF14929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14929_low_8 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 14577666 - 14577968
Alignment:
| Q |
1 |
agtttgagcacttcgtgataagcttcatgaattgtcactctcgagaaatggcaatgctattttttctttggctaatgctagttgtagcgaaagtttacat |
100 |
Q |
| |
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|||| ||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14577666 |
agttggagcacttcgtgataagcttcgtgaattgtcacactcgagaaacggcaatgctattttttctttggctaatgctagttgtagcgaaagtttacat |
14577765 |
T |
|
| Q |
101 |
agcgaattaatcacaaacctttatatgaatattaagtgattttagcgaaagactctcttttgcatcccaccgcttgtgttttccaccaaataagaatcta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14577766 |
agcgaattaatcacaaacctttatatgaatattaagtgattttagcgaaagactctcttttgcatcccaccgcttgtgttttccaccaaataagaatcta |
14577865 |
T |
|
| Q |
201 |
atggttgaagcacttcgtgataaacttcgtgaattgtcagtctctagaaataataatgctcttttctctttggctaatgttacttgtagcgaaagtttat |
300 |
Q |
| |
|
|||||||||| ||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14577866 |
atggttgaag------------tacttcatgaattgtcaatctctcgaaataataatgctcttttctctttggctaatgttacttgtagcgaaagtttat |
14577953 |
T |
|
| Q |
301 |
atagcgaattaatca |
315 |
Q |
| |
|
||||||||||||||| |
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|
| T |
14577954 |
atagcgaattaatca |
14577968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 6 - 315
Target Start/End: Original strand, 14578063 - 14578370
Alignment:
| Q |
6 |
gagcacttcgtgataagcttcatgaattgtcactctcgagaaatggcaatgctattttttctttggctaatgctagttgtagcgaaagtttacatagcga |
105 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| ||| |||||||| ||||||| ||| | ||||||||||||||| |||||||||||||||||||| ||| |
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|
| T |
14578063 |
gagcacttcgtaataagcttcgtgaattgtcagtctagagaaatgacaatgctctttct-ctttggctaatgctacttgtagcgaaagtttacatatcga |
14578161 |
T |
|
| Q |
106 |
attaatcacaaacctttatatgaatattaagtgattttagcgaaagactctcttttgcatcccaccgcttgtgttttccaccaaataagaatctaatggt |
205 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||| | || || || |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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|
| T |
14578162 |
attaatcacgaaccattatatgaatattaagtgactgtaacggaaaactctcttttgcatcc-accagttgtgttttccaccaaataagaatctaatggt |
14578260 |
T |
|
| Q |
206 |
tgaagcacttcgtgataaacttcgtgaattgtcagtctctagaaataataatgctcttttctctttggctaatgttacttgtagcgaaagtttatatagc |
305 |
Q |
| |
|
|| |||||||| |||||| ||| ||||||||| || ||| ||||||| ||||||||||||||||||||||||| |||||||||| |||||||| ||| | |
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|
| T |
14578261 |
tggagcacttcatgataagctttgtgaattgttagcctcgagaaatagcaatgctcttttctctttggctaatgctacttgtagcaaaagtttacatacc |
14578360 |
T |
|
| Q |
306 |
gaattaatca |
315 |
Q |
| |
|
||||||||| |
|
|
| T |
14578361 |
aaattaatca |
14578370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 6 - 315
Target Start/End: Original strand, 14577471 - 14577778
Alignment:
| Q |
6 |
gagcacttcgtgataagcttcatgaattgtcactctcgagaaatggcaatgctattttttctttggctaatgctagttgtagcgaaagtttacatagcga |
105 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||| |||||| |||||||| |||| |||||||||||||||| | ||||||| |||||||||| | |
|
|
| T |
14577471 |
gagcacttcgtgataagcttcgtgaattgtcaatctcaagaaatagcaatgctcttttctctttggctaatgctactaaaagcgaaattttacatagcaa |
14577570 |
T |
|
| Q |
106 |
attaatcacaaacctttatatgaatattaagtgattttagcgaaagactctcttttgcatcccaccgcttgtgttttccaccaaataagaatctaatggt |
205 |
Q |
| |
|
||||||||| |||| | ||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||| || |
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|
| T |
14577571 |
attaatcacgaaccgtgatatgaatattaagtga--ctagcgaaaaactctcttttgcatcccactgcttgtgttttccatcaaataagaatctaatagt |
14577668 |
T |
|
| Q |
206 |
tgaagcacttcgtgataaacttcgtgaattgtcagtctctagaaataataatgctcttttctctttggctaatgttacttgtagcgaaagtttatatagc |
305 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||| ||| ||||| |||||| |||| ||||||||||||| || |||||||||||||||| ||||| |
|
|
| T |
14577669 |
tggagcacttcgtgataagcttcgtgaattgtcacactcgagaaacggcaatgctattttttctttggctaatgctagttgtagcgaaagtttacatagc |
14577768 |
T |
|
| Q |
306 |
gaattaatca |
315 |
Q |
| |
|
|||||||||| |
|
|
| T |
14577769 |
gaattaatca |
14577778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 14577282 - 14577578
Alignment:
| Q |
18 |
ataagcttcatgaattgtcactctcgagaaatggcaatgctattttttctttggctaatgctagttgtagcgaaagtttacatagcgaattaatcacaaa |
117 |
Q |
| |
|
||||||||| |||||||||| |||| |||||| |||||||| |||| ||||||| ||||| | ||||||||||||||||||||||||||||||||| || |
|
|
| T |
14577282 |
ataagcttcgtgaattgtcagtctcaagaaatagcaatgctcttttctctttggataatgttgcttgtagcgaaagtttacatagcgaattaatcacgaa |
14577381 |
T |
|
| Q |
118 |
cctttatatgaatattaagtgattttagcgaaagactctcttttgcatcccaccgcttgtgttttccaccaaataagaatctaatggttgaagcacttcg |
217 |
Q |
| |
|
|| ||||||||||||||||||| ||||| || ||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| ||||||||| |
|
|
| T |
14577382 |
ccgttatatgaatattaagtgaccgtagcggaaaactctcttttgcatcccaccgcttgtg-tttataccaaataagaatttaatggttggagcacttcg |
14577480 |
T |
|
| Q |
218 |
tgataaacttcgtgaattgtcagtctctagaaataataatgctcttttctctttggctaatgttacttgtagcgaaagtttatatagcgaattaatca |
315 |
Q |
| |
|
|||||| ||||||||||||||| |||| ||||||| ||||||||||||||||||||||||| |||| ||||||| |||| ||||| ||||||||| |
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|
| T |
14577481 |
tgataagcttcgtgaattgtcaatctcaagaaatagcaatgctcttttctctttggctaatgctactaaaagcgaaattttacatagcaaattaatca |
14577578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 23 - 315
Target Start/End: Original strand, 14577878 - 14578169
Alignment:
| Q |
23 |
cttcatgaattgtcactctcgagaaatggcaatgctattttttctttggctaatgctagttgtagcgaaagtttacatagcgaattaatcacaaaccttt |
122 |
Q |
| |
|
||||||||||||||| |||| ||||| |||||| |||| ||||||||||||| || |||||||||||||||| ||||||||||||||| |||| || |
|
|
| T |
14577878 |
cttcatgaattgtcaatctctcgaaataataatgctcttttctctttggctaatgttacttgtagcgaaagtttatatagcgaattaatcaagaaccatt |
14577977 |
T |
|
| Q |
123 |
atatgaatattaagtgattttagcgaaagactctcttttgcatcccaccgcttgtgttttccaccaaataagaatctaatggttgaagcacttcgtgata |
222 |
Q |
| |
|
|||||||||||| |||| | |||| || |||||||||||||||||| | | ||||||||||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
14577978 |
atatgaatattacgtgaatgtagcataaaactctcttttgcatcccatcacctgtgttttccaccaaataagaatctaatggttggagcacttcgtaata |
14578077 |
T |
|
| Q |
223 |
aacttcgtgaattgtcagtctctagaaataataatgctcttttctctttggctaatgttacttgtagcgaaagtttatatagcgaattaatca |
315 |
Q |
| |
|
| ||||||||||||||||||| |||||| | ||||||| ||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| |
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|
| T |
14578078 |
agcttcgtgaattgtcagtctagagaaatgacaatgctc-tttctctttggctaatgctacttgtagcgaaagtttacatatcgaattaatca |
14578169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 6 - 244
Target Start/End: Original strand, 14578263 - 14578501
Alignment:
| Q |
6 |
gagcacttcgtgataagcttcatgaattgtcactctcgagaaatggcaatgctattttttctttggctaatgctagttgtagcgaaagtttacatagcga |
105 |
Q |
| |
|
||||||||| |||||||||| |||||||| | |||||||||| |||||||| |||| |||||||||||||||| ||||||| |||||||||||| | | |
|
|
| T |
14578263 |
gagcacttcatgataagctttgtgaattgttagcctcgagaaatagcaatgctcttttctctttggctaatgctacttgtagcaaaagtttacataccaa |
14578362 |
T |
|
| Q |
106 |
attaatcacaaacctttatatgaatattaagtgattttagcgaaagactctcttttgcatcccaccgcttgtgttttccaccaaataagaatctaatggt |
205 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||| ||||| || |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
14578363 |
attaatcacgaacggttatatgaatattaagtgaccgtagcggaaaactctcttttgcatcccaccacttatgttttccaccaaataagaatctaatggt |
14578462 |
T |
|
| Q |
206 |
tgaagcacttcgtgataaacttcgtgaattgtcagtctc |
244 |
Q |
| |
|
|| |||||||| ||||| |||||| ||||||||||||| |
|
|
| T |
14578463 |
tgctgcacttcgcgataagcttcgtaaattgtcagtctc |
14578501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 73 - 220
Target Start/End: Original strand, 8907180 - 8907327
Alignment:
| Q |
73 |
taatgctagttgtagcgaaagtttacatagcgaattaatcacaaacctttatatgaatattaagtgattttagcgaaagactctcttttgcatcccaccg |
172 |
Q |
| |
|
|||||||| ||||||| |||||||||||| |||||||||| |||| ||||||||||||||| ||| | |||| ||| ||||| ||||||||| || || |
|
|
| T |
8907180 |
taatgctacttgtagcaaaagtttacataacgaattaatcgcaaattgttatatgaatattaaatgactatagcaaaaaactctgttttgcatctcatcg |
8907279 |
T |
|
| Q |
173 |
cttgtgttttccaccaaataagaatctaatggttgaagcacttcgtga |
220 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||| |||||||||||| |
|
|
| T |
8907280 |
cttgtgttttccaccaaataaaaatctaattgtttgagcacttcgtga |
8907327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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