View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_high_12 (Length: 499)
Name: NF1492_high_12
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 81 - 483
Target Start/End: Original strand, 41911571 - 41911951
Alignment:
| Q |
81 |
catcttgaattaattgatttcacggagacacaaaatgaatcgcatctttcaagaggtttctgtgcggaagtctttggcacttggctgttatgcatattac |
180 |
Q |
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| T |
41911571 |
catcttgaattaattgatttcacggagacacaaaatgaatcgcatctttcaagaggtttctgtgcagaagtctttggcacttggctgttatgcat--tac |
41911668 |
T |
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| Q |
181 |
aaactgttggttccagccatggatattggtcttatcttatggcagcaaatccttaactatgtctgattgtgatgtacaatgactccttacccagaaaaat |
280 |
Q |
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| T |
41911669 |
aaactgttg-ttcca-------------------tcttatggcagcaaatccttaactatgtatgattgtgatgtacaatgactccttacccagaaaaat |
41911748 |
T |
|
| Q |
281 |
aagttaattaagttaaatcaagacatgttttcagtagctaattaagtgcattatttgtcggtttggtgccgcgtacaatcaggttaggttatatacaaaa |
380 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41911749 |
aagttaattcagttaaatcaagacatgttttcagtagctaattaagtgcattatttgtcggtttggtgccgcgtacaatcagtttaggttatatacaaaa |
41911848 |
T |
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| Q |
381 |
cnnnnnnncttcttctttctttagacaaaacaacaaaatatttttaggcttgatatatgtgtatgattttaagagaaagggtaatcataccttttttaac |
480 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41911849 |
ctttttttcttcttctttctttagacaaaacaacaaaatatttttaggcttgatgcatatgtatgattttaagagaaagggtaatcataccttttttaac |
41911948 |
T |
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