View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_high_14 (Length: 462)
Name: NF1492_high_14
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 24 - 450
Target Start/End: Original strand, 16962289 - 16962715
Alignment:
| Q |
24 |
tcaatgacatgtttgagatatgctcaaatacaatgaatattgtgcttgtcattttgggttggtcctcataagtaatagcacagtgtcctaaaacacccac |
123 |
Q |
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| T |
16962289 |
tcaatgacatgtttgagatatgctcaaatacaatgaatattgtgcttgtcattttgggttggtcctcataagtaatagcacagtgtcctaaaacactcac |
16962388 |
T |
|
| Q |
124 |
caaatgtctatgccttaaataaggtaacaccttcaaattctgatcactgactttgatcaaactcttctgctttacttttacaagattaaccatgaccatt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16962389 |
caaatgtctatgccttaaataaggtaacaccttcaaattctgatcactgactttgatcaaactcttctgctttacttttacaagattaaccatgaccatt |
16962488 |
T |
|
| Q |
224 |
gaaccatctttgagccaacctttaaatagctgtgtaaaaaacaagagaaaatgacattacaaattcactcctgtgggccccatttcattgcaggaagctc |
323 |
Q |
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| T |
16962489 |
gaaccatctttgagccaacctttaaatagctgtgtaaaaaacaagagaaaatgacattacaaattcactcctgtgggccccatttcattgcaggaagctc |
16962588 |
T |
|
| Q |
324 |
ataaaaaaccacaagcacatattatttaaccgacagtgtaaaaaattacaccgtcgataaattataattgacagattattnnnnnnnnttgacttcaatc |
423 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||| |
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| T |
16962589 |
ataaaaaaccacaagcacatattatttaaccgacagtgtaaaaaattacaccgtcaatgaattataattgacagattattaaaaacaattgacttcaatc |
16962688 |
T |
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| Q |
424 |
gtaactacttttaaagttatgtatatt |
450 |
Q |
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| T |
16962689 |
gtaactacttataaagttatatatatt |
16962715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 309
Target Start/End: Original strand, 16215310 - 16215388
Alignment:
| Q |
230 |
tctttgagccaacctttaaatagctgtgtaaaaaacaagagaaaatgacattacaaattcactcctgtgggccccatttc |
309 |
Q |
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|||| |||||| |||||||| | |||||||||| |||||||| |||| ||||||||||||| || ||||||||||||||| |
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| T |
16215310 |
tcttcgagccagcctttaaacaactgtgtaaaa-acaagagacaatgccattacaaattcagtcttgtgggccccatttc |
16215388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 48891739 - 48891809
Alignment:
| Q |
186 |
tcttctgctttacttttacaagattaaccatgaccattgaaccatctttgagccaacctttaaatagctgt |
256 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||||||| | || || ||||||| ||||||| |
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| T |
48891739 |
tcttctgctttagttttacaagattaaccatgagcattgaaccatcctggaacctacctttacctagctgt |
48891809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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