View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1492_high_16 (Length: 455)
Name: NF1492_high_16
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_high_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 53 - 447
Target Start/End: Original strand, 38549168 - 38549558
Alignment:
| Q |
53 |
gacagaaactcgctgtgttcagacattggagttggacttgaactgcactcaagggcagctaggacatggaccaactgcagttacatgcaattgggggtat |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38549168 |
gacagaaactcgctgtgttcagacattggagttggacttgaactgcactcaagggcagctaggacatgggccaactgcagttacatgcaattgggggtat |
38549267 |
T |
|
| Q |
153 |
taatgtaattttggtgtgtggcaatttcagtttgttggatgatgtctaaaatggagcctaagatgaaagaatctctttgtatcctacaaattagagtcat |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
38549268 |
taatgtaattttggtgtgtggcaatttcagtttgttggatgatgtctaaaatggagcccaagatga---aatctctttgtatcctaaaaattagagtcat |
38549364 |
T |
|
| Q |
253 |
ccaaactttgcgccctaattcaaattttaaaatctaataaaagaagaagttttaaatatttttacacattttctttcnnnnnnnnnncatttttacacat |
352 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38549365 |
ccaaactttgctccctaattcaaattttaaaatctaataaaagaagaagttttaaatatttttacacattttctttcaatttttttt--tttttacacat |
38549462 |
T |
|
| Q |
353 |
tttagattatataatcc-gaagtgtcgtagacatggaagaagcttgaaagatgggaaaagaaactctctaaaaattatacttctacgcttcatctc |
447 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38549463 |
tttagattatataatccaaaagtgtcgtagacatggaataagcttgaaagatgggaaaagaaactctctaaaaattatacttctacacttcatctc |
38549558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 7353847 - 7353801
Alignment:
| Q |
17 |
aatatcacccatttaggctccatgcctctcaacaccgacagaaactc |
63 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7353847 |
aatatcacccctttaggctccatgcctctcaacaccttcagaaactc |
7353801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 417
Target Start/End: Original strand, 25790286 - 25790364
Alignment:
| Q |
340 |
catttttacacattttagattatataatccgaagtgtcgtag-acatggaagaagcttgaaagatgggaaaagaaactc |
417 |
Q |
| |
|
||||||||||| ||| ||||||||||||| || ||| |||| || || ||||||||||||| ||||||||||||||| |
|
|
| T |
25790286 |
catttttacacctttcagattatataatctaaaatgttgtaggacttgcgagaagcttgaaaggtgggaaaagaaactc |
25790364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University