View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_high_24 (Length: 419)
Name: NF1492_high_24
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 9 - 403
Target Start/End: Original strand, 44027343 - 44027743
Alignment:
| Q |
9 |
caagaaaatgaaaaatctaagtgcgagtagcacaatttttaaaaaggatcttgatttttgacgatcaaagaatcacacatttgacacaattaacaacttt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |
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| T |
44027343 |
caagaaaatgaaaaatctaagtgcgagtagcacaatttttaaaaaggatcttgatttttggcgatcaaagaatcacacatttgacacaatcaacaatttt |
44027442 |
T |
|
| Q |
109 |
gaccatcaaatcaaaatcaacaggctagagttccaaccttgtaaatcaaatccaaaacacaagtttaaaatatgcaccgctaaattatgatccgatgttc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44027443 |
gaccatcaaatcaaaatcaacaggctagagttccaaccttgtaaatcaaatccaaaacacaagtttaaaatatgcaccgctaaattatgatccgatgttc |
44027542 |
T |
|
| Q |
209 |
caaatcattgcacacacccattttttacac----------ttggttgaaatttatgtcggttcaaccatatagaaaacaacccacatatttgatgtgaaa |
298 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44027543 |
caaatcattgcacacacccattttttacacttcctatttattggttgaaatttatgtcggttcaaccatatagaaaacaacccacatatttgatgtgaaa |
44027642 |
T |
|
| Q |
299 |
atttatcccaatttaattaactgaaatggaagcaaacaaggccaaaatcctacacattatgcatgtgtaagaaagattacaatgctatctaaatcatgtg |
398 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44027643 |
atttatcccaatttaat----tgaaatggaagcaaacaaggccaaaatcctacacattatgcatgtgtaagaaagattacaatgctatctaaatcatgtg |
44027738 |
T |
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| Q |
399 |
tatga |
403 |
Q |
| |
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||||| |
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| T |
44027739 |
tatga |
44027743 |
T |
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Back To:
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Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 9 - 403
Target Start/End: Complemental strand, 43293618 - 43293234
Alignment:
| Q |
9 |
caagaaaatgaaaaatctaagtgcgagtagcacaatttttaaaaaggatcttgatttttgacgatcaaagaatcacacatttgacacaattaacaacttt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |
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| T |
43293618 |
caagaaaatgaaaaatctaagtgcgagtagcacaatttttaaaaaggatcttgatttttggcgatcaaagaatcacacatttgacacaatcaacaatttt |
43293519 |
T |
|
| Q |
109 |
gaccatcaaatcaaaatcaacaggctagagttccaaccttgtaaatcaaatccaaaacacaagtttaaaatatgcaccgctaaattatgatccgatgttc |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43293518 |
gaccatcaaatcaaaatcaacaggctagagttccaaccttgtaaatcaaattcaaaacacaagtttaaaatatgcaccgctaaattatgatccgatgttc |
43293419 |
T |
|
| Q |
209 |
caaatcattgcacacacccattttttacac----------ttggttgaaatttatgtcggttcaaccatatagaaaacaacccacatatttgatgtgaaa |
298 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43293418 |
caaatcattgcacacacccattttttacactttctatttattggttgaaatttatgtcggt----------------caacccacatatttgatgtgaaa |
43293335 |
T |
|
| Q |
299 |
atttatcccaatttaattaactgaaatggaagcaaacaaggccaaaatcctacacattatgcatgtgtaagaaagattacaatgctatctaaatcatgtg |
398 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43293334 |
atttatcccaat----ttaactgaaatggaagcaaacaaggccaaaatcctacacattatgcatgtgtaagaaagattacaatgctatctaaatcatgtg |
43293239 |
T |
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