View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_high_26 (Length: 400)
Name: NF1492_high_26
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 6300105 - 6300492
Alignment:
| Q |
1 |
cctgaagatgaaactggactacaaatccatctctctgcatcatcccatttagaaggtattgttcttccactgttgaagggtgaaacgccagctacatagg |
100 |
Q |
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| T |
6300105 |
cctgaagatgaaactggactacaaatccatctctctgcatcatcccatttagaaggtattgttcttccactgttgaagggtgaaacgccagctacatagg |
6300204 |
T |
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| Q |
101 |
cttgtcttctgatattgctgcttgttgttggatgcaacaatactctttctgagttccaccctttttggttttcaatgnnnnnnnctctgtagtttggttc |
200 |
Q |
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| T |
6300205 |
cttgtcttctgatattgctgcttgttgttggatgcaacaatactctttctgagttccaccctttttggttttcaatgtttttttctctgtaatttggttc |
6300304 |
T |
|
| Q |
201 |
ctttggacttaggaatgaacctagtttctgagaggtaccagaattctttttcatattaacactaactcagttttgcagcttgcaaaaccctcttgagaag |
300 |
Q |
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| T |
6300305 |
ctttggacttaggaatgaacctagtttctgagagggaccagaattctttttcatattaacactaactcagttttgcagcttgcaaaaccctcttgagaag |
6300404 |
T |
|
| Q |
301 |
cactatgtgactaccaatatgataaatactgtttttgctatggttagtatatgatactaagtttagatactataccaagactgatttt |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6300405 |
cactatgtgactaccaatatgataaatactgtttttgctatggttagtatatgatactaagtttagatactataccaagactgatttt |
6300492 |
T |
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