View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_high_36 (Length: 304)
Name: NF1492_high_36
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 19703047 - 19703319
Alignment:
| Q |
1 |
tgaagctgtaatgtaagaaaacaagaaataagaaagactaaaaaggcaaacatggatgttaatgaatgattgataactgataagtatctaccttgcagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
19703047 |
tgaagctgtaatgtaagaaaacaagaaataagaaagactaaaaaggaaaacatggatgttaatgaatgattgat-------aagtatctaccttgcagga |
19703139 |
T |
|
| Q |
101 |
caagagcttaatgcaacagccattgggttgttgttcaactttgacaagcaaaacaggacaaacctcaaatgtgaaaaacttaattgtgtaaacataacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19703140 |
caagagcttaatgcaacagccattgggttgttgttcaactttgacaagcaaaacaggacaaacctcaaatgtgaaaaacttaattgtgtaaacataacac |
19703239 |
T |
|
| Q |
201 |
ctgaatgtatcctcactcacacgttcaatcctttcagcgtctaacactgaatattgacttgctggtaacctcatatattc |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19703240 |
ctgaatgtatcctcactcacacgttcaatcctttcagcgtctaacactgaatattgacttgctggtaacctcatatattc |
19703319 |
T |
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