View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_high_43 (Length: 291)
Name: NF1492_high_43
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_high_43 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 39169967 - 39170243
Alignment:
| Q |
1 |
aaaatccaaaacacatttcctatggtactcgtaaggatgagtagccatctagggtttaatatattcatatttaaatatttatttaatgatataatttctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39169967 |
aaaatccaaaacacatttcctatggtactcgtaaggatgagtagccatctagggtttaatatattcatatttaaatatttatttaatgatataatttctt |
39170066 |
T |
|
| Q |
101 |
gaatactcctctaataatatgaatttaatttgtcaatatataattaatcttttaattttatggaacaaatgtgtatgaataaaacttttgaaaaatgatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39170067 |
gaatactcctctaataatatgaatttaatttgtca----ataattaatcttttaattttatggaacaaatgtgcatgaataaaacttttgaaaaatgatt |
39170162 |
T |
|
| Q |
201 |
tttccatgagattaagatattaatcataattaatttttcttaaaatcaaaatcataaggagtacctggtaagctttgatga |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39170163 |
tttccatgagattaagatattaatcataattaatttttcttaaaatcaaaatcataaggagtacctggtaagctttgatga |
39170243 |
T |
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