View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_high_44 (Length: 287)
Name: NF1492_high_44
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_high_44 |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 31109709 - 31109984
Alignment:
| Q |
1 |
gtcatcgatttttcatatgactgaatggtccatgactacccagtaaattgaactcaactttnnnnnnnnnnnnnnnnnnnnnnngtagtacaaattacaa |
100 |
Q |
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| T |
31109709 |
gtcatcgatttttcatatgactgaatggtccatgactacccagtaaattgaactcaacttttatatctatatctatatctatatgtagtacaaattacaa |
31109808 |
T |
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| Q |
101 |
tttacagcttgtatcaacttgtgcttgcatatcggcatatcagcatggtacttaacaagcgatgaaataacagtttcagtt-------nnnnnnngaagc |
193 |
Q |
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| T |
31109809 |
ttcacagcttgtatcaacttgtgcttgcatatcggcatatcagcatggtacttaacaagcgatgaaataacagtttcagttaaaaaaaaaaaaaaaaagc |
31109908 |
T |
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| Q |
194 |
agaacattagattcttggagaaccaaccaatattggtccgtgactaccaagtaaattgaactcaagttctatatct |
269 |
Q |
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| T |
31109909 |
agaacattagattcttggagaaccaaccaatattggtccgtgactaccaagtaaattgaactcaacttctatatct |
31109984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 267
Target Start/End: Original strand, 31080096 - 31080169
Alignment:
| Q |
190 |
aagcagaacattagattcttggagaaccaaccaatattggtccgtgactaccaagtaaattgaactcaagttctatat |
267 |
Q |
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|||||||||||||||||||||||||||||| || |||||| |||| |||||||||||||||||||| |||||||| |
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| T |
31080096 |
aagcagaacattagattcttggagaaccaa----tactggtccatgaccaccaagtaaattgaactcaacttctatat |
31080169 |
T |
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