View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1492_high_48 (Length: 268)

Name: NF1492_high_48
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1492_high_48
NF1492_high_48
[»] chr5 (6 HSPs)
chr5 (5-268)||(43225720-43225985)
chr5 (39-180)||(43258556-43258694)
chr5 (66-187)||(43254295-43254414)
chr5 (38-162)||(43229923-43230042)
chr5 (38-187)||(43246665-43246820)
chr5 (38-187)||(43253130-43253285)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 268
Target Start/End: Complemental strand, 43225985 - 43225720
Alignment:
Q  5 tcttttgtgttcaaaattgcaacaacctaaattatgttgcaatttaatcaacttttcaatatagtgaaaa--ttaaaatgaattcttgacaaatatttag 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||    
T  43225985 tcttttgtgttcaaaattgcaacaacctaaattatgttgcaatttaatcaacttttcaatatagtgaaaaaattaaaatcaattcttgacaaatatttag 43225886  T
Q  103 tgtatagtttgattgaaaaatgaatcatatttgtgagtatgcaactcaacatttgtcaatgctatcgaaataaataaa----taaaactaagcattaggt 198  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||    
T  43225885 tgtatagtttgattgataaatgaatcatatttgtgagtatgcaactcaacatttgtcaatgctatcgaaataaataaataaataaaactaagcattaggt 43225786  T
Q  199 catatgctaccannnnnnngaggtaagtaaaagtaattggaagttgaatttggtttatgttaatattcta 268  Q
    ||| ||||||||       |||    ||||| ||||||||||||||||||||||||||||||||||||||    
T  43225785 catctgctaccatttttttgag----gtaaaggtaattggaagttgaatttggtttatgttaatattcta 43225720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 39 - 180
Target Start/End: Complemental strand, 43258694 - 43258556
Alignment:
Q  39 tgttgcaatttaatcaacttttcaatatagtgaaaattaaaatgaattcttgacaaatatttagtgtat-agtttgattgaaaaatgaatcatatttgtg 137  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||||| |    
T  43258694 tgttgcaatttaatcaactttt-aatgtagtgaaaattaaaatgaattcttaacaaacatttagtgtataagtttgattggaaaatgaatcatatttgcg 43258596  T
Q  138 agtatgcaactcaacatttgtcaatgctatcgaaataaataaa 180  Q
    |||||   |||||||||||||||||||| ||||||||||||||    
T  43258595 agtat---actcaacatttgtcaatgctttcgaaataaataaa 43258556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 66 - 187
Target Start/End: Complemental strand, 43254414 - 43254295
Alignment:
Q  66 tagtgaaaattaaaatgaattcttgacaaatatttagtgtata-gtttgattgaaaaatgaatcatatttgtgagtatgcaactcaacatttgtcaatgc 164  Q
    |||||||||||||||| ||||||| ||||| || ||||||||| ||||| ||| ||||||||||||||||||||||||   |||||||||||||||||||    
T  43254414 tagtgaaaattaaaattaattcttaacaaacatctagtgtataagtttgtttggaaaatgaatcatatttgtgagtat---actcaacatttgtcaatgc 43254318  T
Q  165 tatcgaaataaataaataaaact 187  Q
    | |||||||||||||||||||||    
T  43254317 tttcgaaataaataaataaaact 43254295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 162
Target Start/End: Complemental strand, 43230042 - 43229923
Alignment:
Q  38 atgttgcaatttaatcaacttttcaatatagtgaaaattaaaatgaattcttgacaaatatttagtgtatagtttgattgaaaaatgaatcatatttgtg 137  Q
    ||||||||||||||||||||||| |||  |||||| ||||||||| ||||||   ||| ||||||  ||||||||||||| |||||||||||||||| ||    
T  43230042 atgttgcaatttaatcaactttt-aatg-agtgaagattaaaatggattctt---aaacatttaggatatagtttgattggaaaatgaatcatatttatg 43229948  T
Q  138 agtatgcaactcaacatttgtcaat 162  Q
    |||||||||||||||||||||||||    
T  43229947 agtatgcaactcaacatttgtcaat 43229923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 187
Target Start/End: Complemental strand, 43246820 - 43246665
Alignment:
Q  38 atgttgcaatttaatcaacttttcaatatagtgaaaattaaaatgaattcttgacaaatatttagtgtatagtttgattgaaaaatgaatcat------- 130  Q
    ||||| |||||||||||| |||| |||  |||||| |||||| || ||||||   ||| ||||||||||||||||||||||||||||||||||           
T  43246820 atgttacaatttaatcaattttt-aatg-agtgaagattaaactggattctt---aaacatttagtgtatagtttgattgaaaaatgaatcattatcatg 43246726  T
Q  131 ----atttgtgagtatgcaactcaacatttgtcaatgctatcgaaataaataaataaaact 187  Q
        |||| ||||||||||||||||||||||||||| || || || |||||||| ||||||    
T  43246725 agatatttatgagtatgcaactcaacatttgtcaatactttccaagtaaataaagaaaact 43246665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 187
Target Start/End: Complemental strand, 43253285 - 43253130
Alignment:
Q  38 atgttgcaatttaatcaacttttcaatatagtgaaaattaaaatgaattcttgacaaatatttagtgtatagtttgattgaaaaatgaatcat------- 130  Q
    ||||| |||||||||||| |||| |||  |||||| |||||| || ||||||   ||| ||||||||||||||||||||||||||||||||||           
T  43253285 atgttacaatttaatcaattttt-aatg-agtgaagattaaactggattctt---aaacatttagtgtatagtttgattgaaaaatgaatcattatcatg 43253191  T
Q  131 ----atttgtgagtatgcaactcaacatttgtcaatgctatcgaaataaataaataaaact 187  Q
        |||| ||||||||||||||||||||||||||| || || || |||||||| ||||||    
T  43253190 agatatttatgagtatgcaactcaacatttgtcaatactttccaagtaaataaagaaaact 43253130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University