View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_high_54 (Length: 247)
Name: NF1492_high_54
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_high_54 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 35999037 - 35999259
Alignment:
| Q |
12 |
atgaacacctaataacaataaccaaaaccaaatgttttggcataacttcttgtcttacataaactgcatgcatatactctgacatcccacccagcactat |
111 |
Q |
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| T |
35999037 |
atgaacacctaataacaataaccaaaaccaaatgttttggcataacttcttgtcttacataaactgcatgcatatactctgacatcccacccagcactat |
35999136 |
T |
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| Q |
112 |
taactaatcacttaacccccaagatatgattcaggattaattatatttatttgt--nnnnnnnntatgtaacnnnnnnnaataaaaatacaatagctaag |
209 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||| |||||| |||||||||||||| |
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| T |
35999137 |
taactaatcacttaacccccaagatatgattcaagattaattatatttatttgtaaaaaaaaaaaaagtaactttttttaataaatatacaatagctaag |
35999236 |
T |
|
| Q |
210 |
atatactatgtgacattaataat |
232 |
Q |
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||||||||||||||||||||||| |
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| T |
35999237 |
atatactatgtgacattaataat |
35999259 |
T |
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