View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1492_high_56 (Length: 245)
Name: NF1492_high_56
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_high_56 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 88 - 227
Target Start/End: Complemental strand, 10055864 - 10055725
Alignment:
| Q |
88 |
caatgacgtagaatttgacactgag--tgttagtttgttaagcaattgtccctggatcagnnnnnnnaatgaagtgccaacgttgcactcgttaaatttg |
185 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10055864 |
caatgacgtagaatttgacactgagagtgttagtttgttaagcaattgtccctggatcagtttttttaatgaagtgccaacgttgcactcgttaaatttg |
10055765 |
T |
|
| Q |
186 |
gtttacgatatgtacgaatggggtacttagttagctttatct |
227 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10055764 |
gtttacgatatgtacgaat--ggtacttagttagctttatct |
10055725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 10056916 - 10056869
Alignment:
| Q |
17 |
tgtaagattgaaaaagaaacattaatgtttcattgctatcttaaaatg |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10056916 |
tgtaagattgaaaaagaaacattaatgtttcattgctatcttaaaatg |
10056869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University