View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_high_59 (Length: 241)
Name: NF1492_high_59
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_high_59 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 49679254 - 49679031
Alignment:
| Q |
1 |
accactgacaattcctcaacaaaaaacttccagtattcaaaccaatccaattcttctcgtcataaatcatctcattccaaccatgcatcacaaaattatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49679254 |
accactgacaattcctcaacaaaaaacttccagtattcaaaccaatccaattcttctcatcataaatcatctcattccaaccatgcatcacaaaattatg |
49679155 |
T |
|
| Q |
101 |
atccttataacgctcccacggaacctcgaaagccatatcagtaaacatagcatcactatccatccaccacaaaaactcaacttcaggatgtgacaacaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49679154 |
atccttataacgctcccacggaacctcaaaagccatatcagtaaacatagcatcactatccatccaccacaaaaactcaacttcaggatgtgacaacaat |
49679055 |
T |
|
| Q |
201 |
agcttcctgatcaaaggaagttta |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
49679054 |
agcttcctgatcaaaggaagttta |
49679031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 45168654 - 45168576
Alignment:
| Q |
120 |
ggaacctcgaaagccatatcagtaaacatagcatcactatccatccaccacaaaaactcaacttcaggatgtgacaaca |
198 |
Q |
| |
|
|||| ||| ||| ||||||| ||||| | ||||||||||||||||||||| | | ||||||||||| |||||||||| |
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|
| T |
45168654 |
ggaagctcaaaaaccatatctgtaaaaaaagcatcactatccatccaccaaatccattcaacttcagggtgtgacaaca |
45168576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 20181250 - 20181463
Alignment:
| Q |
1 |
accactgacaattcctcaacaaaaaacttccagtattcaaaccaatccaattcttctcgtcataaatcatctcattccaaccatgcatcacaaaattatg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| || ||||| | |||||| ||||||||||||||||| ||||| || |
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|
| T |
20181250 |
accactgacagttcctcaacaaaaaactcccagtattcaacccaatccaattcttttcatcatacaccatctcgttccaaccatgcatcaccaaatt-tg |
20181348 |
T |
|
| Q |
101 |
a-tccttataacgctcccacggaacctcgaaagccatatcagtaaacatagcatcactatccatccaccacaaaaactcaacttcaggatgtgacaacaa |
199 |
Q |
| |
|
| || ||||| | ||||||||| || || ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||| ||| | |
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|
| T |
20181349 |
agtctttatacctctcccacggcacttcaaaagccatatccgtaaacatagcatcactatccatccaccacaaaaactccacttctgggtgtgccaaaag |
20181448 |
T |
|
| Q |
200 |
tagcttcctgatcaa |
214 |
Q |
| |
|
|||||||| ||||| |
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|
| T |
20181449 |
aagcttcctaatcaa |
20181463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 44268598 - 44268811
Alignment:
| Q |
1 |
accactgacaattcctcaacaaaaaacttccagtattcaaaccaatccaattcttctcgtcataaatcatctcattccaaccatgcatcacaaaattatg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| || ||||| | |||||| ||||||||||||||||| ||||| || |
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|
| T |
44268598 |
accactgacagttcctcaacaaaaaactcccagtattcaacccaatccaattcttttcatcatacaccatctcgttccaaccatgcatcaccaaatt-tg |
44268696 |
T |
|
| Q |
101 |
a-tccttataacgctcccacggaacctcgaaagccatatcagtaaacatagcatcactatccatccaccacaaaaactcaacttcaggatgtgacaacaa |
199 |
Q |
| |
|
| || ||||| | ||||||||| || || ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||| ||| | |
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|
| T |
44268697 |
agtctttatacctctcccacggcacttcaaaagccatatccgtaaacatagcatcactatccatccaccacaaaaactccacttctgggtgtgccaaaag |
44268796 |
T |
|
| Q |
200 |
tagcttcctgatcaa |
214 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
44268797 |
aagcttcctaatcaa |
44268811 |
T |
|
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