View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_high_65 (Length: 235)
Name: NF1492_high_65
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_high_65 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 38865436 - 38865217
Alignment:
| Q |
1 |
ctgcacatgtttaaacctactattgactaggagacaaaacatatatacacacccttttaattgtttcctaagtaaatatcaattgcaataaggtatgtta |
100 |
Q |
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| T |
38865436 |
ctgcacatgtttaaacctactattgactaggagacaaaacatatataaacacccttttaattgtttcctaagtaaatatcaattgcaataaggtatgtta |
38865337 |
T |
|
| Q |
101 |
caaggaaactaaaaaatgaaaaccaaccgaccattggtttaagtcccccctcggcccctcctattttgattgttttcacctctgcacattcctcatccat |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38865336 |
caaggaaactaaaaaatgaaaaccaaccgaccgttggtttaagtccccccttggcccctcctattttgattgttttcacctctgcacattcctcacccat |
38865237 |
T |
|
| Q |
201 |
atcatatccttttccaacca |
220 |
Q |
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|||||||||||||||||||| |
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| T |
38865236 |
atcatatccttttccaacca |
38865217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 132
Target Start/End: Original strand, 38807997 - 38808130
Alignment:
| Q |
2 |
tgcacatgtttaaacctactattgactaggagacaaaacatatatacacacccttttaattgtttcctaagtaaatatcaattgca--ataaggtatgtt |
99 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||| ||||||| || ||||| |||||| |
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| T |
38807997 |
tgcacatgtttaaacctagtattgactaggagacaatacaaatataaacacccttttaattgtttcctaagtaaagatcaattacaatataagatatgtt |
38808096 |
T |
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| Q |
100 |
acaaggaaactaaaaaatg-aaaaccaaccgacc |
132 |
Q |
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|||||||||| |||||||| |||||||||||||| |
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| T |
38808097 |
acaaggaaacgaaaaaatgcaaaaccaaccgacc |
38808130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 38808184 - 38808229
Alignment:
| Q |
156 |
ccctcctattttgattgttttcacctctgcacattcctcatccata |
201 |
Q |
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||||||||||||| |||||||||||| ||||||||||||| ||||| |
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| T |
38808184 |
ccctcctattttgtttgttttcacctttgcacattcctcacccata |
38808229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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