View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1492_high_7 (Length: 634)

Name: NF1492_high_7
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1492_high_7
NF1492_high_7
[»] chr1 (1 HSPs)
chr1 (12-633)||(5171662-5172286)


Alignment Details
Target: chr1 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 12 - 633
Target Start/End: Original strand, 5171662 - 5172286
Alignment:
Q  12 aatactctcaacttgagtgttaa-tgttaaaattttnnnnnnnttgctcatcactaagaatgtttaaccatctacaccacactaccgaatacacccataa 110  Q
    |||||||||||||| | |||||| ||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5171662 aatactctcaacttcaatgttaaatgttaaaattttaaaaaaattgctcatcactaagaatgtttaaccatctacaccacactaccgaatacacccataa 5171761  T
Q  111 agagtcgtttattgaagtgatactattatgagaaaaatattaatatca--atcctcgac----ttggatctaatcaaatttatgttggaccaacataatt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    |||||||||| ||||||||||||||||||||||||||    
T  5171762 agagtcgtttattgaagtgatactattatgagaaaaatattaatatcacaatcctcgacacacttggatctaaccaaatttatgttggaccaacataatt 5171861  T
Q  205 tagtgggtcataaattttaaccaatataaaagaatgtgatgaataatgtatgttaaaagaatgtattgctaatatgtgtgtataagttcaaagcgaccta 304  Q
    || |||||||||||||| ||||||||||||| |||||||||||||||  ||||||||||||| |||| ||||||||||  ||||||||||||||||||||    
T  5171862 taatgggtcataaatttcaaccaatataaaaaaatgtgatgaataat--atgttaaaagaatctattactaatatgtg--tataagttcaaagcgaccta 5171957  T
Q  305 taaaaagttcttttgtgaaaactgctcggattagaatttgaatcgattttttataaccaaaccacatttacatatatcccataagttgtcttaggctcgt 404  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5171958 taaaaagttcttttgtgaaaactgctcggattagaatttgaattaattttttataaccaaaccacatttacatatatcccataagttgtcttaggctcgt 5172057  T
Q  405 tgcttctccatggtttcttccttttttgtcatttttgctctgagctcttagccgttgtctgatgaaccttgttgtgagctattctatgagttacttgtgc 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||    
T  5172058 tgcttctccatggtttcttccttttttgtcatttttgctctgagctcttagtcattgtctgatgaaccttgttgtgagttattctatgagttacttgtgc 5172157  T
Q  505 tagaatagttccattatttgtaattgtgtatcatttgtgcataaaggaatagattaannnnnnnaagtcggataatattacaatagatgacaaacttatc 604  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||| | |||||||||       |||||||||||||||| ||||||| ||||| |||||    
T  5172158 tagaatagttccattatttgtaattttgtatgatttgtgcataaatgtatagattaatttttttaagtcggataatattataatagataacaaaattatc 5172257  T
Q  605 tctaaaaatatttaacaatgttacattct 633  Q
    |||||||||||||||||||||||||||||    
T  5172258 tctaaaaatatttaacaatgttacattct 5172286  T

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