View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_high_70 (Length: 204)
Name: NF1492_high_70
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_high_70 |
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Alignment Details
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 43226124 - 43226065
Alignment:
| Q |
46 |
atccttacctttaaattagtggtttcataatttgatttagatacgaaacacttgtactag |
105 |
Q |
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| T |
43226124 |
atccttacctttaatttagtgctttcataatttgatttagatacgaaacacttttactag |
43226065 |
T |
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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 43226254 - 43226208
Alignment:
| Q |
1 |
aggtaattcgagagttgttatgtttttggtcaaaaccaaaggaatat |
47 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
43226254 |
aggtaatttgagagttgttatatttttggtcaaaaccaaaggaatat |
43226208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 43242004 - 43241958
Alignment:
| Q |
1 |
aggtaattcgagagttgttatgtttttggtcaaaaccaaaggaatat |
47 |
Q |
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|||||||| |||||||||||||||| ||||||||||||||| ||||| |
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| T |
43242004 |
aggtaatttgagagttgttatgtttatggtcaaaaccaaagaaatat |
43241958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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