View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1492_low_1 (Length: 819)

Name: NF1492_low_1
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1492_low_1
NF1492_low_1
[»] chr7 (7 HSPs)
chr7 (13-802)||(33902207-33903005)
chr7 (21-129)||(24211326-24211434)
chr7 (21-159)||(46603696-46603832)
chr7 (21-114)||(9603484-9603577)
chr7 (21-114)||(9831055-9831148)
chr7 (32-114)||(4040862-4040948)
chr7 (58-118)||(45996484-45996544)
[»] scaffold0192 (1 HSPs)
scaffold0192 (21-159)||(13360-13498)
[»] chr8 (6 HSPs)
chr8 (21-159)||(25267030-25267168)
chr8 (21-131)||(2233868-2233978)
chr8 (21-129)||(32162764-32162870)
chr8 (21-128)||(39907939-39908046)
chr8 (67-128)||(17072689-17072750)
chr8 (67-128)||(17575521-17575582)
[»] chr3 (15 HSPs)
chr3 (21-158)||(41242179-41242316)
chr3 (21-118)||(16041133-16041230)
chr3 (21-118)||(16053073-16053170)
chr3 (21-159)||(11076939-11077076)
chr3 (21-118)||(16037577-16037674)
chr3 (29-129)||(17517888-17517988)
chr3 (32-158)||(37820798-37820924)
chr3 (21-118)||(39933347-39933443)
chr3 (24-123)||(9821003-9821102)
chr3 (21-129)||(28389387-28389501)
chr3 (21-164)||(31229723-31229866)
chr3 (21-125)||(5050593-5050697)
chr3 (92-129)||(34730789-34730826)
chr3 (41-129)||(50744732-50744820)
chr3 (92-129)||(34870135-34870172)
[»] chr6 (6 HSPs)
chr6 (21-129)||(12185707-12185815)
chr6 (21-128)||(9456209-9456316)
chr6 (21-129)||(3441218-3441326)
chr6 (21-129)||(10068183-10068289)
chr6 (37-129)||(25070402-25070494)
chr6 (20-69)||(10483415-10483464)
[»] chr4 (8 HSPs)
chr4 (21-128)||(3067606-3067713)
chr4 (21-128)||(5050426-5050533)
chr4 (29-117)||(4059118-4059206)
chr4 (55-127)||(31040283-31040356)
chr4 (38-129)||(43967986-43968077)
chr4 (21-123)||(18371146-18371248)
chr4 (55-125)||(36622116-36622186)
chr4 (21-129)||(45891795-45891904)
[»] chr1 (6 HSPs)
chr1 (21-129)||(25808484-25808592)
chr1 (21-157)||(46298512-46298648)
chr1 (21-129)||(31501054-31501162)
chr1 (46-128)||(19339915-19339997)
chr1 (22-129)||(49423341-49423448)
chr1 (21-129)||(23392714-23392823)
[»] chr2 (4 HSPs)
chr2 (21-124)||(2126184-2126287)
chr2 (39-128)||(11152190-11152279)
chr2 (64-126)||(22348730-22348792)
chr2 (55-126)||(22345686-22345757)
[»] chr5 (5 HSPs)
chr5 (21-127)||(35075847-35075954)
chr5 (33-118)||(31559096-31559181)
chr5 (76-129)||(5150835-5150888)
chr5 (22-129)||(10020725-10020829)
chr5 (21-82)||(7802030-7802090)
[»] scaffold0402 (1 HSPs)
scaffold0402 (46-128)||(2978-3060)
[»] scaffold1786 (1 HSPs)
scaffold1786 (21-129)||(365-473)


Alignment Details
Target: chr7 (Bit Score: 633; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 13 - 802
Target Start/End: Original strand, 33902207 - 33903005
Alignment:
Q  13 aatatccgaaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatattttt 112  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||| ||||||||| |    
T  33902207 aatattcgaaaaatggaattaaattataaattatgtcttgaaaagataagattttaaatttctaaaatattaaatgcataattttcaataaaatatttct 33902306  T
Q  113 atctttaatttcttaacctttgctttcaggacataagttagcatttctcattgtattcttatatggtgtgttgaaataaatccaagtagaatcaactttt 212  Q
    ||||||||||| ||||| ||||| |||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||    
T  33902307 atctttaattttttaacttttgccttcagggcataagttagcatttctcattggattcttgtatggtgtgttgaaataaatgcaagtagaatcaactttt 33902406  T
Q  213 tgatgttcattcaataccattgttgattaatatccaccatcactttgagatcattgaggtcacgttacaccttttatcaataataacatctttaaataat 312  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33902407 tgatgttcattcgataccattgttgattaatatccaccatcactttgagatcattgaggtcacgttacaccttttatcaataataacatctttaaataat 33902506  T
Q  313 gctaacgattgatatttgactcaaaaccatcgagagaatagaacgtttcctcattagaccctattctcacgctttcttcttcttcctctccaattcccac 412  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33902507 gctaacgattgatatttgactcaaaaccattgagagaatagaacgtttcctcattagaccctattctcacgctttcttcttcttcctctccaatt-ccac 33902605  T
Q  413 acagtctcacacatttcaattcttcattatccatt-----------ttctttttctctaacttttcaatgtacaccatggtccacatttctcacattcat 501  Q
    || ||||||||||||||||||||||||||||||||           |||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  33902606 actgtctcacacatttcaattcttcattatccattttctttttcaattctttttctctaacttttcaatgcacaccatggtccacatttctcacgttcat 33902705  T
Q  502 gacgggacatctattatcnnnnnnngaatgacgctaaggactgaacatctagaacgtgatcaaaagcggatgagataacaacgatcttgattgtttttat 601  Q
    ||||||||||||||||||       ||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  33902706 gacgggacatctattatc-ttttttgaatgacgctaaggactgaacatctggaacgtgatcaaaagtggatcagataacaacgatcttgattgtttttat 33902804  T
Q  602 tatatttcatataacaaagtgatacaattgggatgcaattacaatggcagagaaaaatacttctgccattaaggttgtttcaagaaaatccttatggttc 701  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33902805 tatatttcatataacaaagtgatacaattgggatgcaattacaatggcagagaaaaatacttctgccattaaggttgtttcaagaaaatctttatggttc 33902904  T
Q  702 tttttcacaacaacaacattatttttcatcatgtcatggctctttgttctccgttccacacgttcagattcaacaccagccaccatctcacagcttcttt 801  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33902905 tttttcacaacaacaacattatttttcatcatgtcatggctctttgttctccgttccacacgttcagattcaacaccagccaccatctcacagcttcttt 33903004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 24211326 - 24211434
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 120  Q
    |||||| ||||||||||||||||||||| |||| ||||| | ||||  |||||||  |||||||||| || ||||||||||||||||||| ||||||| |    
T  24211326 aaaaatagaattaaatcataaattatgttttgaaaagattagatttccaatttcttgaatattgaatacacaatttccaacaaaatatttctatctttga 24211425  T
Q  121 tttcttaac 129  Q
    |||||||||    
T  24211426 tttcttaac 24211434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 46603832 - 46603696
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 120  Q
    |||||||||||||||  |||||||  ||||||| ||||||| ||||||||||||||||| ||  |||||| ||||||||| ||||  ||| ||||||||     
T  46603832 aaaaatggaattaaaatataaatt--gtcttgaaaagataagattttaaatttctaaaacatgaaatgcacaatttccaataaaaagtttctatctttag 46603735  T
Q  121 tttcttaacctttgctttcaggacataagttagcatttc 159  Q
    ||||||||| ||||| || ||| || |||||||||||||    
T  46603734 tttcttaacttttgccttaagggcacaagttagcatttc 46603696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 9603577 - 9603484
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttat 114  Q
    |||||| |||||||| |||||||  ||| |||| ||||||| ||||||||||||||||| ||  |||||||||||| ||| |||||||||||||    
T  9603577 aaaaatagaattaaaacataaatattgttttgaaaagataagattttaaatttctaaaacatgaaatgcataattttcaataaaatatttttat 9603484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 9831148 - 9831055
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttat 114  Q
    |||||| |||||||| |||||||  ||| |||| ||||||| ||||||||||||||||| ||  |||||||||||| ||| |||||||||||||    
T  9831148 aaaaatagaattaaaacataaatattgttttgaaaagataagattttaaatttctaaaacatgaaatgcataattttcaataaaatatttttat 9831055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 4040948 - 4040862
Alignment:
Q  32 taaatcataaattatgtcttgataagataaaattttaaatttctaaaat----attgaatgcataatttccaacaaaatatttttat 114  Q
    ||||||||||||| |||||||| ||||||| |||||||| ||||| |||    |||||||||| ||||||||||||||| |||||||    
T  4040948 taaatcataaattttgtcttgaaaagataatattttaaaattctagaatattgattgaatgcacaatttccaacaaaatgtttttat 4040862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 45996544 - 45996484
Alignment:
Q  58 ataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 118  Q
    |||||||||||||||| || |||||| ||| || ||||| ||| |||||||||||||||||    
T  45996544 ataaaattttaaatttttagaatattaaatacacaatttacaataaaatatttttatcttt 45996484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 13498 - 13360
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 120  Q
    ||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| ||||||||||||||| ||| |||||||      
T  13498 aaaaatgcaattaaatcataaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttccaacaaaatgtttctatctttgc 13399  T
Q  121 tttcttaacctttgctttcaggacataagttagcatttc 159  Q
    ||||||||| | ||| || || ||| |||||| ||||||    
T  13398 tttcttaacttgtgccttgagaacacaagttaacatttc 13360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 4e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 25267030 - 25267168
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 120  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||| ||||| ||||||| ||||||||||||||| ||| |||||||      
T  25267030 aaaaatggaattaaatcataaattatgtcttgaaatgataagattttaaatttctataatatcgaatgcacaatttccaacaaaatgtttctatctttgg 25267129  T
Q  121 tttcttaacctttgctttcaggacataagttagcatttc 159  Q
    ||||||||| | |||||| ||| || |||||| ||||||    
T  25267130 tttcttaacttatgctttgagggcagaagttaacatttc 25267168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 2233868 - 2233978
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 120  Q
    |||||| ||||||||||||||||| ||| |||| ||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||      
T  2233868 aaaaatagaattaaatcataaattttgttttgaaaagataaaattttaaatttttagaatattgaatgcataatttccaacaaaatacttttatctttgg 2233967  T
Q  121 tttcttaacct 131  Q
    ||| |||||||    
T  2233968 ttttttaacct 2233978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 32162870 - 32162764
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 120  Q
    |||||||||||||||||||||||| | | |||| || |||| |||||| ||||||||||||||| || || || ||| |||||||| ||||||| ||| |    
T  32162870 aaaaatggaattaaatcataaattttattttgaaaatataagattttacatttctaaaatattg-atacacaa-ttcgaacaaaatgtttttatttttga 32162773  T
Q  121 tttcttaac 129  Q
    |||||||||    
T  32162772 tttcttaac 32162764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 39908046 - 39907939
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 120  Q
    ||||||| ||||||| |||||||| | | || | ||||||| ||||||||||||||||||||  |||||||||| | | | ||||||||| ||||||||     
T  39908046 aaaaatgaaattaaaacataaattttattttaaaaagataacattttaaatttctaaaatatgaaatgcataatattctataaaatatttatatctttag 39907947  T
Q  121 tttcttaa 128  Q
    ||| ||||    
T  39907946 ttttttaa 39907939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 17072750 - 17072689
Alignment:
Q  67 taaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 128  Q
    |||||||||| ||||||||||||| |||   ||||||||||||||||||||| |||||||||    
T  17072750 taaatttctagaatattgaatgcacaatccacaacaaaatatttttatctttgatttcttaa 17072689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 17575521 - 17575582
Alignment:
Q  67 taaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 128  Q
    |||||||||| ||||||||||||| |||   ||||||||||||||||||||| |||||||||    
T  17575521 taaatttctagaatattgaatgcacaatccacaacaaaatatttttatctttgatttcttaa 17575582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 2e-33; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 41242179 - 41242316
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 120  Q
    |||||| |||||||||||||||||||||| ||| ||||||| |||| |||||||||||||||| |||||| ||||||||||||||| |||||||||||      
T  41242179 aaaaatagaattaaatcataaattatgtcctgaaaagataagatttcaaatttctaaaatattaaatgcacaatttccaacaaaatgtttttatctttgg 41242278  T
Q  121 tttcttaacctttgctttcaggacataagttagcattt 158  Q
    ||||||||| | ||| || ||| ||||||||| |||||    
T  41242279 tttcttaacttgtgccttgagggcataagttaacattt 41242316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 16041230 - 16041133
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 118  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| |||||||| |||||| ||| |||||||    
T  16041230 aaaaatggaattaaatcataaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttccatcaaaatgtttctatcttt 16041133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 16053170 - 16053073
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 118  Q
    |||| |||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| ||||||||||||||| ||| |||||||    
T  16053170 aaaattggaattaaatcataaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttccaacaaaatgtttctatcttt 16053073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 11076939 - 11077076
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 120  Q
    ||||||||||||||| |||||||| |||||||| || |||| ||||||||||||||||||||||| |||| |||||||||| |||| ||| ||||||| |    
T  11076939 aaaaatggaattaaaacataaattttgtcttgaaaatataagattttaaatttctaaaatattgattgcacaatttccaac-aaatgtttctatctttga 11077037  T
Q  121 tttcttaacctttgctttcaggacataagttagcatttc 159  Q
    ||||||||| | ||| || | |||| |||||||||||||    
T  11077038 tttcttaacttgtgccttaacgacacaagttagcatttc 11077076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 16037674 - 16037577
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 118  Q
    |||||||||||||||||| |||||||||||||| ||||||| |||||||||||||| ||||||||||||| |||||||| |||||| ||| |||||||    
T  16037674 aaaaatggaattaaatcacaaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttccatcaaaatgtttctatcttt 16037577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 17517888 - 17517988
Alignment:
Q  29 aattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 128  Q
    |||||||||||||||||| |||||| ||||||| | ||||||||| || ||||||||||||| |||||| |||||||||||| ||||||| |||||||||    
T  17517888 aattaaatcataaattatatcttgaaaagataagaatttaaatttttagaatattgaatgcacaatttctaacaaaatatttctatctttgatttcttaa 17517987  T
Q  129 c 129  Q
    |    
T  17517988 c 17517988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 32 - 158
Target Start/End: Original strand, 37820798 - 37820924
Alignment:
Q  32 taaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaacct 131  Q
    |||| |||||||  |||||| | ||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||| |||| ||| ||||| |    
T  37820798 taaaacataaatattgtcttaaaaagataagattttaaatttctaaaacatggaatgcataatttccaataaaatatttttatatttagtttattaactt 37820897  T
Q  132 ttgctttcaggacataagttagcattt 158  Q
     || ||| ||| ||||||||| |||||    
T  37820898 gtgttttaagggcataagttaacattt 37820924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 39933443 - 39933347
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 118  Q
    |||||| ||||||||||||||||| ||| |||| |||||||||||| |||||| || ||||||||||||| ||||| ||||||||  |||||||||||    
T  39933443 aaaaatagaattaaatcataaattgtgttttgaaaagataaaattt-aaatttttagaatattgaatgcacaattttcaacaaaaattttttatcttt 39933347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 9821003 - 9821102
Alignment:
Q  24 aatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaattt 123  Q
    ||||||||| ||| ||||||||||| |||| ||||||| |||| ||||||  | ||| ||||||||| |||||| |||||||||||| ||||||||||||    
T  9821003 aatggaattgaattataaattatgttttgaaaagataagatttaaaattttcagaatcttgaatgcacaatttctaacaaaatatttctatctttaattt 9821102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 28389501 - 28389387
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaattt------ctaaaatattgaatgcataatttccaacaaaatatttttat 114  Q
    |||||| ||||||||||||||||||| |||||| ||||||| |||||||||||      ||| || ||| |||| | |||||||||||||||||||||||    
T  28389501 aaaaatagaattaaatcataaattatatcttgaaaagataatattttaaatttataggactagaacattaaatgtacaatttccaacaaaatatttttat 28389402  T
Q  115 ctttaatttcttaac 129  Q
    ||||  |||||||||    
T  28389401 ctttggtttcttaac 28389387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 31229723 - 31229866
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 120  Q
    |||||| ||| |||| |||||||||| |||||| |  |||| ||||||||||||||||| || ||||| | ||||||||| ||||| ||| ||| | |||    
T  31229723 aaaaatagaagtaaaacataaattatatcttgaaatcataagattttaaatttctaaaacatagaatgtacaatttccaataaaatgtttctatatgtaa 31229822  T
Q  121 tttcttaacctttgctttcaggacataagttagcatttctcatt 164  Q
    | ||||||| | |||||| ||| || || ||| |||||| ||||    
T  31229823 tctcttaacttatgctttaagggcacaaattaacatttcccatt 31229866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 5050593 - 5050697
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 120  Q
    |||||||||||||||   ||| || ||| |||| |||| |||||||||||||| ||| |||||||||||| |||||  || ||||||||| ||| |||||    
T  5050593 aaaaatggaattaaaatgtaacttttgtattgaaaagacaaaattttaaatttttaatatattgaatgcacaatttttaagaaaatatttctatgtttaa 5050692  T
Q  121 tttct 125  Q
     ||||    
T  5050693 cttct 5050697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 34730789 - 34730826
Alignment:
Q  92 aatttccaacaaaatatttttatctttaatttcttaac 129  Q
    |||||||||||||||||||||||||||| |||||||||    
T  34730789 aatttccaacaaaatatttttatctttagtttcttaac 34730826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 129
Target Start/End: Original strand, 50744732 - 50744820
Alignment:
Q  41 aattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaac 129  Q
    |||| ||||| || ||| ||| ||||||||||| ||||||||  |||||| |||||  || ||||||||| |||||||| |||||||||    
T  50744732 aattttgtctagagaagttaagattttaaatttttaaaatatgaaatgcacaatttttaataaaatatttatatctttagtttcttaac 50744820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 34870135 - 34870172
Alignment:
Q  92 aatttccaacaaaatatttttatctttaatttcttaac 129  Q
    |||||||||||||||||||||||||||  |||||||||    
T  34870135 aatttccaacaaaatatttttatctttggtttcttaac 34870172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 6e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 12185707 - 12185815
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 120  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| ||||||||||||| ||||| ||||||||||||| ||| ||||     
T  12185707 aaaaatggaattaaatcataaattatgtcttgaaaagataagattttgaatttctagaatattgaatgcacaattttcaacaaaatatttctatttttag 12185806  T
Q  121 tttcttaac 129  Q
    |||||||||    
T  12185807 tttcttaac 12185815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 9456209 - 9456316
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 120  Q
    |||||||||||||||| |||||||||||||||| || |||| |||||||||||||| | ||||||||||| ||||||||||||||||||| ||||||| |    
T  9456209 aaaaatggaattaaattataaattatgtcttgaaaatataagattttaaatttctagactattgaatgcacaatttccaacaaaatatttctatctttga 9456308  T
Q  121 tttcttaa 128  Q
    ||||||||    
T  9456309 tttcttaa 9456316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 3441218 - 3441326
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 120  Q
    ||||||| ||||||| |||||||| | |||||| || |||| |||||||| |||||||||||  |||||| ||||||| | ||||| ||| |||||||||    
T  3441218 aaaaatgaaattaaaacataaattttatcttgaaaatataagattttaaagttctaaaatatgaaatgcacaatttcctataaaatgtttctatctttaa 3441317  T
Q  121 tttcttaac 129  Q
    ||| |||||    
T  3441318 ttttttaac 3441326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 10068289 - 10068183
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 120  Q
    ||||||| ||||||| |||||||| |||||||| |  |||||||||||||||||||||| ||  |||||| ||  ||||| ||||||||| ||| ||||     
T  10068289 aaaaatgaaattaaaacataaattttgtcttgacagaataaaattttaaatttctaaaacatgaaatgcacaa--tccaataaaatatttctatatttag 10068192  T
Q  121 tttcttaac 129  Q
    |||||||||    
T  10068191 tttcttaac 10068183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 25070402 - 25070494
Alignment:
Q  37 cataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaac 129  Q
    |||||||| |||||| | ||||||| ||||||||||||||||||||  ||| || |||||  || ||||| ||| |||||||| ||| |||||    
T  25070402 cataaattttgtcttcaaaagataagattttaaatttctaaaatatgaaatacacaatttttaataaaatgtttatatctttagttttttaac 25070494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 10483415 - 10483464
Alignment:
Q  20 gaaaaatggaattaaatcataaattatgtcttgataagataaaattttaa 69  Q
    |||||||||||||||| |||||||| |||||||| || |||| |||||||    
T  10483415 gaaaaatggaattaaaacataaattttgtcttgaaaatataagattttaa 10483464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 3e-32; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 3067606 - 3067713
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 120  Q
    ||||||| |||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||      
T  3067606 aaaaatgaaattaaatcataaattatttcttgaaaagataagattttaaatttctaaaatattgaatgcacaatttccaacaaaatgtttctatctttgg 3067705  T
Q  121 tttcttaa 128  Q
    ||||||||    
T  3067706 tttcttaa 3067713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 5050533 - 5050426
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 120  Q
    |||||| |||||||||||||||||||| ||  | ||||||| ||||||||||||||||||||| |||||| ||||| ||| ||||| |||||||||||      
T  5050533 aaaaatagaattaaatcataaattatgcctcaagaagataagattttaaatttctaaaatattaaatgcacaattttcaataaaatgtttttatctttgg 5050434  T
Q  121 tttcttaa 128  Q
    ||||||||    
T  5050433 tttcttaa 5050426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 4059118 - 4059206
Alignment:
Q  29 aattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctt 117  Q
    ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||  ||| || |||||| || ||||| ||||||||||    
T  4059118 aattaaaacataaattttgtcttgaaaagataaaattttaaatttctaaaatataaaatacacaatttctaataaaatgtttttatctt 4059206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 31040356 - 31040283
Alignment:
Q  55 aagataaaattttaaatttctaaaatattga-atgcataatttccaacaaaatatttttatctttaatttctta 127  Q
    ||||||| ||||||||||||||||| ||| | ||||||||||||||| ||||||||||||| ||||||||||||    
T  31040356 aagataagattttaaatttctaaaacattaatatgcataatttccaataaaatatttttatatttaatttctta 31040283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 43967986 - 43968077
Alignment:
Q  38 ataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaac 129  Q
    |||||||||||||||| ||||||| |||| |||||| || |||||| |||||| ||||| ||||||||| ||| |||||||  |||||||||    
T  43967986 ataaattatgtcttgaaaagataagatttaaaatttttagaatattaaatgcacaattttcaacaaaatgtttctatctttggtttcttaac 43968077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 18371248 - 18371146
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 120  Q
    ||||| |||||||||  ||||||| | |||| | || |||| |||||||| ||||||||||| ||||||| ||||||| | ||||||||| |||||||||    
T  18371248 aaaaaaggaattaaaatataaattttatcttaaaaatataagattttaaagttctaaaatatagaatgcacaatttcctataaaatatttctatctttaa 18371149  T
Q  121 ttt 123  Q
    |||    
T  18371148 ttt 18371146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 36622116 - 36622186
Alignment:
Q  55 aagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttct 125  Q
    ||||||||||||||||||| ||| |||||||||||| ||||||||| ||||| ||| ||| |||| |||||    
T  36622116 aagataaaattttaaatttttaatatattgaatgcacaatttccaaaaaaatgtttatatgtttactttct 36622186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 45891904 - 45891795
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtctt-gataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttta 119  Q
    |||||| |||||||||||||| || |||||| || || |||| ||||||||||| ||  | |||||||||| ||| ||||||||||| ||| || ||||     
T  45891904 aaaaatagaattaaatcataatttttgtctttgaaaaaataagattttaaatttttaggacattgaatgcacaatctccaacaaaatgtttctaactttg 45891805  T
Q  120 atttcttaac 129  Q
     |||||||||    
T  45891804 gtttcttaac 45891795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 2e-30; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 25808484 - 25808592
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 120  Q
    |||||||||||||||||||||||  |||||| | ||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||||||||      
T  25808484 aaaaatggaattaaatcataaatgttgtcttcaaaagataaaattttaaatttttaaaatattgaatacacaatttctaacaaaatatttttatctttgg 25808583  T
Q  121 tttcttaac 129  Q
    |||||||||    
T  25808584 tttcttaac 25808592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 46298648 - 46298512
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 120  Q
    |||||| |||||||| |||||||  |||||||| ||||||| |||||||||||||| ||||||||||  | ||||||||||||||| |||||||||||      
T  46298648 aaaaatagaattaaaacataaatgttgtcttgaaaagataagattttaaatttctataatattgaatatacaatttccaacaaaatgtttttatctttgg 46298549  T
Q  121 tttcttaacctttgctttcaggacataagttagcatt 157  Q
    ||||||||| | ||  || ||||||||||||||||||    
T  46298548 tttcttaacttgtgtcttaaggacataagttagcatt 46298512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 31501054 - 31501162
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 120  Q
    ||||||| ||||||||||||| || ||| |||| ||||||| |||||||||||||| || ||| |||||| |||||||||||| || ||| ||||||| |    
T  31501054 aaaaatgaaattaaatcataatttttgttttgaaaagataagattttaaatttctagaacattaaatgcacaatttccaacaatatgtttctatctttga 31501153  T
Q  121 tttcttaac 129  Q
    ||| |||||    
T  31501154 ttttttaac 31501162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 19339997 - 19339915
Alignment:
Q  46 tgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 128  Q
    |||||||| ||||||| | |||||| ||||||||||||||||||| ||||||||||||||| ||| |||||||  ||||||||    
T  19339997 tgtcttgaaaagataagactttaaagttctaaaatattgaatgcacaatttccaacaaaatgtttatatctttggtttcttaa 19339915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 49423448 - 49423341
Alignment:
Q  22 aaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaat 121  Q
    ||||| |||||||| |||||||  | |||| | ||||||| ||||||||||| ||||| ||  |||||| ||||| ||| ||||||||||||| ||||||    
T  49423448 aaaatagaattaaaacataaatattatcttaaaaagataagattttaaatttttaaaacatgaaatgcacaattttcaataaaatatttttatgtttaat 49423349  T
Q  122 ttcttaac 129  Q
    || |||||    
T  49423348 ttattaac 49423341  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 23392714 - 23392823
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaatttt-aaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttta 119  Q
    |||||||||||||||  ||||||| | |||| | || |||| ||||| ||| || ||||||||| |||||| |||||  || |||||||||  || ||||    
T  23392714 aaaaatggaattaaaaaataaattttatcttaaaaatataagatttttaaaattttaaaatattaaatgcacaattttaaataaaatatttcaattttta 23392813  T
Q  120 atttcttaac 129  Q
    ||||||||||    
T  23392814 atttcttaac 23392823  T

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Target: chr2 (Bit Score: 68; Significance: 6e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 2126184 - 2126287
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 120  Q
    ||||||||||||||||||||||| ||||||||| || ||||  |||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||     
T  2126184 aaaaatggaattaaatcataaatcatgtcttgaaaatataagtttttaaatttttaaaatattgaatgcacaatttccaacaaaatatttctatctttag 2126283  T
Q  121 tttc 124  Q
    ||||    
T  2126284 tttc 2126287  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 11152279 - 11152190
Alignment:
Q  39 taaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 128  Q
    ||||||||||||||| ||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||| |||||| |||||||||    
T  11152279 taaattatgtcttgagaagataagattttaaatttctagaatattgaatgcacaatttccaacaaaatattttcatctttgatttcttaa 11152190  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 22348730 - 22348792
Alignment:
Q  64 ttttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttctt 126  Q
    ||||||| || |||||||||||||||| ||||| ||| ||||||||||||| |||| ||||||    
T  22348730 ttttaaacttttaaaatattgaatgcacaattttcaagaaaatatttttatatttagtttctt 22348792  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 22345686 - 22345757
Alignment:
Q  55 aagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttctt 126  Q
    |||||||| |||||||| | |||||||||||||||| |||||| || |||||| ||  || |||||||||||    
T  22345686 aagataaatttttaaatgtttaaaatattgaatgcacaatttcaaagaaaatacttaaatatttaatttctt 22345757  T

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Target: chr5 (Bit Score: 56; Significance: 9e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 35075954 - 35075847
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaac-aaaatatttttatcttta 119  Q
    |||||| |||||||||||||| || |||||||| ||||||| |||||||||||||| ||||||||||||| ||||| |||| ||||| ||| ||||||||    
T  35075954 aaaaatagaattaaatcataatttttgtcttgaaaagataagattttaaatttctagaatattgaatgcacaattttcaacaaaaatgtttatatcttta 35075855  T
Q  120 atttctta 127  Q
     |||||||    
T  35075854 gtttctta 35075847  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 31559096 - 31559181
Alignment:
Q  33 aaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatcttt 118  Q
    |||| |||||||||||||||| || ||||||||||||||| |||||||| | |||||| ||| ||||||||||| ||| |||||||    
T  31559096 aaataataaattatgtcttgaaaacataaaattttaaattgctaaaatactaaatgcacaatgtccaacaaaatgtttctatcttt 31559181  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 5150888 - 5150835
Alignment:
Q  76 aaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaac 129  Q
    ||||||||||||||||||||| ||| |||||||||| |||||||  ||||||||    
T  5150888 aaaatattgaatgcataattttcaagaaaatattttaatctttagcttcttaac 5150835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 10020829 - 10020725
Alignment:
Q  22 aaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaat 121  Q
    |||||||||||||| || ||||  |||||||| || ||||| |||||||||||||||| || ||||| |  |||||   |||||||||| ||| ||||||    
T  10020829 aaaatggaattaaaacaaaaatattgtcttgaaaatataaatttttaaatttctaaaacatagaatgaacgatttc---caaaatatttctatatttaat 10020733  T
Q  122 ttcttaac 129  Q
    || |||||    
T  10020732 ttattaac 10020725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 7802090 - 7802030
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatat 82  Q
    |||||||||||||||    ||||| |||||| | ||||||||||||||||||||||||||||    
T  7802090 aaaaatggaattaaaatgcaaattttgtcttaa-aagataaaattttaaatttctaaaatat 7802030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 3060 - 2978
Alignment:
Q  46 tgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaatttcttaa 128  Q
    |||||||| ||||||| | |||||| ||||||||||||||||||| ||||||||||||||| ||| |||||||  ||||||||    
T  3060 tgtcttgaaaagataagactttaaagttctaaaatattgaatgcacaatttccaacaaaatgtttatatctttggtttcttaa 2978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1786 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold1786
Description:

Target: scaffold1786; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 473 - 365
Alignment:
Q  21 aaaaatggaattaaatcataaattatgtcttgataagataaaattttaaatttctaaaatattgaatgcataatttccaacaaaatatttttatctttaa 120  Q
    ||||||| |||||||  ||||||| | |||| | || |||| |||||||| || ||||||||| |||||| |||||  ||||||||||||  || |||||    
T  473 aaaaatgaaattaaaaaataaattttatcttaaaaatataagattttaaaattttaaaatattaaatgcacaattttgaacaaaatatttcaatttttaa 374  T
Q  121 tttcttaac 129  Q
    | |||||||    
T  373 tatcttaac 365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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