View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1492_low_10 (Length: 561)

Name: NF1492_low_10
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1492_low_10
NF1492_low_10
[»] chr7 (3 HSPs)
chr7 (13-552)||(31832244-31832783)
chr7 (498-544)||(30751454-30751500)
chr7 (442-483)||(2047987-2048028)
[»] chr6 (1 HSPs)
chr6 (497-536)||(32975923-32975962)
[»] chr3 (1 HSPs)
chr3 (497-536)||(3757993-3758032)
[»] chr2 (2 HSPs)
chr2 (503-542)||(15866760-15866799)
chr2 (504-536)||(44216864-44216896)
[»] chr8 (1 HSPs)
chr8 (498-536)||(41620378-41620416)
[»] scaffold0103 (1 HSPs)
scaffold0103 (503-536)||(51513-51546)
[»] chr5 (1 HSPs)
chr5 (447-484)||(32059308-32059345)


Alignment Details
Target: chr7 (Bit Score: 487; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 13 - 552
Target Start/End: Complemental strand, 31832783 - 31832244
Alignment:
Q  13 caaacaatgttgatgtgatcttttttccatataaaatggatgatcaaattgactcatattctcctaatacatcggtacaatgtcgaatatgtcacgatga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31832783 caaacaatgttgatgtgatcttttttccatataaaatggatgatcaaattgactcatattctcctaatacatcggtacaatgtcgaatatgtcacgatga 31832684  T
Q  113 agatgaagacttaaacatggatacaccttgttcttgttgtggtaccttgaaggtaagaattaccttgctcgttttctttctttattttccgactgtgaac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31832683 agatgaagacttaaacatggatacaccttgttcttgttgtggtaccttgaaggtaagaattaccttgctcgttttctttctttattttccgactgtgaac 31832584  T
Q  213 atcgttctttaattaagacaaagatcggaacaaatagattgaacaaactgtgtatggcatannnnnnnacaatgtagttttcaaaattcatctatatgac 312  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||||||| |||||||||||||| | ||||||    
T  31832583 atcgttctttaattaagacaaagatcggaataaatagattgaacaaactgtgtatggcatattcttttacaatgtaattttcaaaattcatttgtatgac 31832484  T
Q  313 tttataactgatatacagtccaaaattatttgagtttgtgccaccattaggatattgttatcatgttttgcgccagtatacgtccttttgcaagcttggc 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  31832483 tttataactgatatacagtccaaaattatttgagtttgtgccaccattaggatattgttatcatgttttgccctagtatacgtccttttgcaagcttggc 31832384  T
Q  413 ttaattaacagttttcatttgagaatttttctacttgcataagtatttgtgatactctttgagagagtttatacgaaaaactttgtttggctttatttta 512  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31832383 ttaattaacagttttcatttgagaatttatctacttgcataagtatttgtgatactgtttgagagagtttatacgaaaaactttgtttggctttatttta 31832284  T
Q  513 tattttgttacaaaaataacttatgcacaagcccctatgt 552  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31832283 tattttgttacaaaaataacttatgcacaagcccctatgt 31832244  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 544
Target Start/End: Complemental strand, 30751500 - 30751454
Alignment:
Q  498 tttggctttattttatattttgttacaaaaataacttatgcacaagc 544  Q
    |||| ||||||||||||||||||||||||||||  |||| |||||||    
T  30751500 tttgactttattttatattttgttacaaaaatagtttattcacaagc 30751454  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 483
Target Start/End: Original strand, 2047987 - 2048028
Alignment:
Q  442 tctacttgcataagtatttgtgatactctttgagagagttta 483  Q
    |||||| ||||||  |||||||||||||||||||||||||||    
T  2047987 tctactagcataaacatttgtgatactctttgagagagttta 2048028  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 536
Target Start/End: Complemental strand, 32975962 - 32975923
Alignment:
Q  497 gtttggctttattttatattttgttacaaaaataacttat 536  Q
    ||||| |||||||||||||||||||||| |||||||||||    
T  32975962 gtttgactttattttatattttgttacagaaataacttat 32975923  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 536
Target Start/End: Complemental strand, 3758032 - 3757993
Alignment:
Q  497 gtttggctttattttatattttgttacaaaaataacttat 536  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  3758032 gtttgactttattttatattttgttacaaaaatagcttat 3757993  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 503 - 542
Target Start/End: Original strand, 15866760 - 15866799
Alignment:
Q  503 ctttattttatattttgttacaaaaataacttatgcacaa 542  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  15866760 ctttattttacattttgttacaaaaataacttatacacaa 15866799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 536
Target Start/End: Complemental strand, 44216896 - 44216864
Alignment:
Q  504 tttattttatattttgttacaaaaataacttat 536  Q
    ||||||||||||||||||| |||||||||||||    
T  44216896 tttattttatattttgttataaaaataacttat 44216864  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 536
Target Start/End: Original strand, 41620378 - 41620416
Alignment:
Q  498 tttggctttattttatattttgttacaaaaataacttat 536  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  41620378 tttgactttattttatcttttgttacaaaaataacttat 41620416  T

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Target: scaffold0103 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 536
Target Start/End: Complemental strand, 51546 - 51513
Alignment:
Q  503 ctttattttatattttgttacaaaaataacttat 536  Q
    |||||||||||||||||||| |||||||||||||    
T  51546 ctttattttatattttgttataaaaataacttat 51513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 484
Target Start/End: Original strand, 32059308 - 32059345
Alignment:
Q  447 ttgcataagtatttgtgatactctttgagagagtttat 484  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  32059308 ttgcataagtacttgtgatactatttgagagagtttat 32059345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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