View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_low_11 (Length: 552)
Name: NF1492_low_11
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_low_11 |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 12 - 534
Target Start/End: Complemental strand, 13716051 - 13715531
Alignment:
| Q |
12 |
ataattctaattggaacatagggaatgtggagaatgttctcttttggaaggacatgtggcccggtgagccattggtgcagtctctaagcattcctactca |
111 |
Q |
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| T |
13716051 |
ataattctaattggaacatagggaatgtggagaatgttctcttttggaagcacatgtggcccggtgagccattggtgaagtctctaagcattcctactca |
13715952 |
T |
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| Q |
112 |
tttgcatgcttagctgaacatgaaggtgtcatattacattgtgcaccaacaatggcagattccctcatacattagccgtaaatatcctactttgacggtg |
211 |
Q |
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| T |
13715951 |
tttgcatgcttagctgaacatgaaggtgtcatattacatcgtgcaccaacaatggcagattccctcatacattagccctaaatatcctactttgacggtg |
13715852 |
T |
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| Q |
212 |
ctgatacaaaatacgactctttgcattgaacctcaaaatgactgtttgcattggcttcactctatggatggggatttgtccaacaagttagcttatgatt |
311 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13715851 |
ctgatacaaaataccactctttgcattgaacctcaaaatgactgtttgcattggcttcactctatggatggggatttgtctaacaagttagcttatgatt |
13715752 |
T |
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| Q |
312 |
ttctgaatacgaatcaagttgagttggtgcaagtttatttgaaatgcctttgtccccaccccccacatnnnnnnnnnnnnnnnntcgggccttcatttgt |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13715751 |
ttctgaatacgaatcaagttgagttggtgcaagtttatttggaatgcctttgtccccaccccccacat--acacacacacacactcgggccttcatttgt |
13715654 |
T |
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| Q |
412 |
ttggagattggctcatcataagcttctaactaatgaccagttacgaataagagggtgtattttggtctctgcttgttgcttctgctatatgacagctgag |
511 |
Q |
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| T |
13715653 |
ttaaagattggctcatcaaaagcttctaactgatgaccagttacgaataagagggtgtattttggtctctgtttgttgcttctgctatatgacagctgag |
13715554 |
T |
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| Q |
512 |
cacattatttttaattgctctgt |
534 |
Q |
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| T |
13715553 |
cacattatttttaattgctctgt |
13715531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 108; Significance: 6e-54; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 36318 - 36099
Alignment:
| Q |
13 |
taattctaattggaacatagggaatgtggagaatgttctcttttggaaggacatgtggcccggtgagccattggtgcagtctctaagcattcctactcat |
112 |
Q |
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|||||||| |||||| || ||||||| |||||||||||||||||||||||||| |||| |||||||| |||||||||||||| ||||||||| | ||| |
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| T |
36318 |
taattctacttggaatattgggaatggggagaatgttctcttttggaaggacaggtggttgggtgagccgttggtgcagtctctcagcattccttcacat |
36219 |
T |
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| Q |
113 |
ttgcatgcttagctgaacatgaaggtgtcatattacattgtgcaccaacaatggcagattccctcatacattagccgtaaatatcctactttgacggtgc |
212 |
Q |
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| T |
36218 |
tttcatgctcagctggacatgaaggtgtcagattacattctgcaccatcaatggcggattcccacctacattagttctaaatatcctaccttgacggttc |
36119 |
T |
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| Q |
213 |
tgatacaaaatacgactctt |
232 |
Q |
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|||||||||||| |||||| |
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| T |
36118 |
agatacaaaataccactctt |
36099 |
T |
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