View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_low_12 (Length: 515)
Name: NF1492_low_12
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 39226546 - 39227045
Alignment:
| Q |
1 |
attccaggtttctcaccaccatttttctgagactctaatgtttctgatgaagatttgttgcatggattcaaatcatatccacataactttggattaccaa |
100 |
Q |
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| T |
39226546 |
attccaggtttctcaccaccatttttctgagactctaatgtttctgatgaagatttgttgcatggattcaaatcatatccacataactttggattaccaa |
39226645 |
T |
|
| Q |
101 |
caaaggatgtagagttgaacactgagaattgtcctatttcaggaactgagccagagaagtcattatgagagaaatcagctgaagttaagcccttaataga |
200 |
Q |
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| T |
39226646 |
caaaggatgtagagttgaacactgagaattgtcctatttcaggaactgagccagagaagtcattatgagagaaatcagctgaagttaagcccttaataga |
39226745 |
T |
|
| Q |
201 |
accaagttcctttggaagtgtttggtttaggttgttccatgagacattaagatagttaagtatgtgaatttgagaaacctgaattggaataggacctgat |
300 |
Q |
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| T |
39226746 |
accaagttcctttggaagtgtttggtttaggtagttccatgagacattaagatagttaagtatgtgaatttgagaaacctgaattggaataggacctgat |
39226845 |
T |
|
| Q |
301 |
aatttgttctgactcaaatctaaaaaggtaagtgaagaacatttacctatttcaataggaatagttcctgaaaagttgttgaaactcatatccaatctga |
400 |
Q |
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| T |
39226846 |
aatttgttctgactcaaatctaaaaaggtaagtgaagaacatttacctatttcaataggaatagttcctgaaaagttgttgaaactcatatccaacctga |
39226945 |
T |
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| Q |
401 |
gaatgttcttcaactttcctatatctgaagggatttcacctgagaatctatttccatgaagaagcagaatctgcaagtttggaaagtttccaatagaatt |
500 |
Q |
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| T |
39226946 |
gaatgttcttcaactttcctatatctgaagggatttcacctgagaatctatttccatgaagaagcagaatctgcaagtttggaaagtttccaatagaatt |
39227045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 154 - 494
Target Start/End: Complemental strand, 16734508 - 16734168
Alignment:
| Q |
154 |
gagaagtcattatgagagaaatcagctgaagttaagcccttaatagaaccaagttcctttggaagtgtttggtttaggttgttccatgagacattaagat |
253 |
Q |
| |
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||||||| ||||||||||||||| ||||||||||||||||| | | || || || || |||| ||||||||| || |||||||| |||||||||| |
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| T |
16734508 |
gagaagttattatgagagaaatctgctgaagttaagccctttaaggctcctagctctttaggaatgctttggtttaagtgattccatgaaacattaagat |
16734409 |
T |
|
| Q |
254 |
agttaagtatgtgaatttgagaaacctgaattggaataggacctgataatttgttctgactcaaatctaaaaaggtaagtgaagaacatttacctatttc |
353 |
Q |
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| T |
16734408 |
ggtttagtatatgaatttgagcaagttgaattggaataggacctgaaaattggttttggctcaaatccaaataagttagtaaggtacatttacctatttc |
16734309 |
T |
|
| Q |
354 |
aataggaatagttcctgaaaagttgttgaaactcatatccaatctgagaatgttcttcaactttcctatatctgaagggatttcacctgagaatctattt |
453 |
Q |
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| | |||||||| |||||||||||||| || ||||| ||| ||||||| || || | |||||||||||||| || |||| ||||||||||| ||| |
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| T |
16734308 |
acttggaatagtacctgaaaagttgttactgcttatatctaatttgagaatttttttgagttttcctatatctgatggaatttggcctgagaatctgttt |
16734209 |
T |
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| Q |
454 |
ccatgaagaagcagaatctgcaagtttggaaagtttccaat |
494 |
Q |
| |
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||| ||| | ||| | ||||| |||||||| |||||||| |
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| T |
16734208 |
ccactaagttgaagagtttgcaaatttggaaaatttccaat |
16734168 |
T |
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