View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_low_18 (Length: 453)
Name: NF1492_low_18
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 129 - 445
Target Start/End: Original strand, 34699628 - 34699944
Alignment:
| Q |
129 |
catgagctgagatcccttcttttcctcaagaacgataaatttagagtgtacaaaagcatcactgtgtttgtttggcatcccaactttggcccgaaacaaa |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34699628 |
catgagctgagatcccttcttttcctcaagaacgataaatttagagtgtacaaaagcatcactgtgtttgtttggcatcccaactttggcccgaaacaaa |
34699727 |
T |
|
| Q |
229 |
caaaaattatatagtgtacacttaaaaaatttattnnnnnnnnttaggtaaaccaaacatatgcctagtgattcttaatatagagtgtccttttnnnnnn |
328 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34699728 |
caaaaattatatagtgtacacttaaaaaatttattaaaaaaaattaggtaaaccaaacatatgcctagtgattcttaatatagagtgtccttttaaaaaa |
34699827 |
T |
|
| Q |
329 |
ngttgttcttacaaattaagcaaacaataacatgcttcaccatgtcagaggcactaacaattaattccattaacaaacacttttgttgaatagtttaaaa |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34699828 |
agttgttcttacaaattaagcaaacaataacatgcttcaccatgtcagaggcactaacaattaattccattaacaaacactttcgttgaatagtttaaaa |
34699927 |
T |
|
| Q |
429 |
tcgtcaaaccctttgct |
445 |
Q |
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||||||||||||||||| |
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| T |
34699928 |
tcgtcaaaccctttgct |
34699944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 34699533 - 34699569
Alignment:
| Q |
34 |
ataaataaattggaaggccgaactcattctatatgag |
70 |
Q |
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| T |
34699533 |
ataaataaattggaaggccgaactcattctatatgag |
34699569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 129 - 445
Target Start/End: Original strand, 26997272 - 26997588
Alignment:
| Q |
129 |
catgagctgagatcccttcttttcctcaagaacgataaatttagagtgtacaaaagcatcactgtgtttgtttggcatcccaactttggcccgaaacaaa |
228 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26997272 |
catgagttgagatcccttcttttcctcaagaacgataaatgtagagtgtacaaaagcatcactgtgtttgtttggcatcccaactttggcccgaaacaaa |
26997371 |
T |
|
| Q |
229 |
caaaaattatatagtgtacacttaaaaaatttattnnnnnnnnttaggtaaaccaaacatatgcctagtgattcttaatatagagtgtccttttnnnnnn |
328 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26997372 |
caaaaattatatagtgtacactaaaaaaatttattaaaaaaaattaggtaaaccaaacatatgcctagtgattcttaatatagagtgtccttttaaaaaa |
26997471 |
T |
|
| Q |
329 |
ngttgttcttacaaattaagcaaacaataacatgcttcaccatgtcagaggcactaacaattaattccattaacaaacacttttgttgaatagtttaaaa |
428 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26997472 |
agttgttcttacaaattaagcaaacaataacatgcttcaccatgtcagaggcactaacaattaattccattaacaaacactttcgttgaatagtttaaaa |
26997571 |
T |
|
| Q |
429 |
tcgtcaaaccctttgct |
445 |
Q |
| |
|
||||||||||||||||| |
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| T |
26997572 |
tcgtcaaaccctttgct |
26997588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 272 - 370
Target Start/End: Complemental strand, 27062711 - 27062615
Alignment:
| Q |
272 |
ttaggtaaaccaaacatatgcctagtgattcttaatatagagtgtccttttnnnnnnngttgttcttacaaattaagcaaacaataacatgcttcacca |
370 |
Q |
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||||||||||||||| ||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27062711 |
ttaggtaaaccaaacttatgcctagtgattcctagtatagagtgtccttt--aaaaaagttgttcttacaaattaagcaaacaataacatgcttcacca |
27062615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 257
Target Start/End: Complemental strand, 27062859 - 27062761
Alignment:
| Q |
162 |
gataaatttagagtgtacaaaagcatcactgtgtttgtttggcatcccaactttg-gcccgaaacaaacaaaaattatat--agtgtacacttaaaaaa |
257 |
Q |
| |
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|||||||| ||||||| ||||||| | |||||||||||||| ||||||||||||| | |||||||||| |||||||| |||||||||| |||||| |
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| T |
27062859 |
gataaattaagagtgtgcaaaagcgttactgtgtttgtttgacatcccaactttgtatcataaacaaacaacaattatatgaagtgtacactaaaaaaa |
27062761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 26997178 - 26997213
Alignment:
| Q |
35 |
taaataaattggaaggccgaactcattctatatgag |
70 |
Q |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
26997178 |
taaataaattggaaggccgaactcattccatatgag |
26997213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 70
Target Start/End: Complemental strand, 27063020 - 27062986
Alignment:
| Q |
36 |
aaataaattggaaggccgaactcattctatatgag |
70 |
Q |
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||||||||||||||||||||||||||| ||||||| |
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| T |
27063020 |
aaataaattggaaggccgaactcattccatatgag |
27062986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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