View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_low_2 (Length: 767)
Name: NF1492_low_2
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_low_2 |
 | |
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| [»] scaffold0245 (1 HSPs) |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 706; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 706; E-Value: 0
Query Start/End: Original strand, 1 - 756
Target Start/End: Complemental strand, 19703017 - 19702265
Alignment:
| Q |
1 |
ataagtttgatggtcagtagtattgttttgctatatctcatgttacttctcgtgaatctcggtcgtcgttagttggatgaagatcagatgacttgtattt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
19703017 |
ataagtttgatggtcagtagtattgttttgctatatctcatgttacttctcatgaatctcggtcgt---tagttggatgaagatcagattacttgtattt |
19702921 |
T |
|
| Q |
101 |
taaagctcgttcttttaagccatgatatgagttgtctgatcttcatccaactatcaagatcccttactgcatgtacggaatctatgtccaaaatgtagac |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19702920 |
taaagctccttcttttaagccatgatatgagttgtctgatcttcatccaactatcaagatcccttactgcatgtacggaatctatgtccaaaatgtagac |
19702821 |
T |
|
| Q |
201 |
tcatgatacaaaagggtagatgaaatggaagaattctttagatgttactattcgtttaaagtagtaaatgttaatgtagctaaggatggttacggtgatt |
300 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19702820 |
tcacgatacaaaagggtagatgaaatggaagaattctttagatgttactattcgtttaaagtagtaaatgttaatgtagttaaggatggttacggtgatt |
19702721 |
T |
|
| Q |
301 |
ccaaaattatatgtatacctccatgtttgctcaagaagtagaggtagttttcttgttcccttcccgagaaaaggaaaagggaaatctgtaggatatgtca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | ||||||||||||||||||||| |
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| T |
19702720 |
ccaaaattatatgtatacctccatgtttgctcaagaagtagaggtagttttcctgttcccttcctgagaaaaggaagaaggaaatctgtaggatatgtca |
19702621 |
T |
|
| Q |
401 |
tgtcatttgattcatgctactttcaggaatgtcttttcaatactttaatgtggtaatgcagctataatggtgaaccggatatcatgtgaaagtgactcgg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19702620 |
tgtcatttgattcatgctactttcaggaatgtcttttcaatactttaatgtggtaatgcagctataatggtgaaccggatatcatgtgaaagtgactcgg |
19702521 |
T |
|
| Q |
501 |
ataagtcattggtgcagcaactcacatcagacactataattgaggtggtagtactctagtttactatcgttttcttctgatttttattttgtgtcatttc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19702520 |
ataagtcattggtgcagcaactcacatcagacactataattgaggtggtagtactctagtttactatcgttttcttctgatttttattttgtgtcatttc |
19702421 |
T |
|
| Q |
601 |
agttaaatttgctttgcattgctatgtcgaattcaggtaagcattgaaattcctttcgctttcaaagcaataccaaagcaagcaattgaatcagctggga |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19702420 |
agttaaatttgctttgcattgctatgtcgaattcaggtaagcattgaaattcctttcgctttcaaagcaataccaaagcaagcaattgaatcagctggga |
19702321 |
T |
|
| Q |
701 |
ctcaagtccttgaacaaatactcaagattatgcttccccgttttatgtcacaggtt |
756 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19702320 |
ctcaagtccttgaacaaatactcaagattatgcttccccgttttatgtcacaggtt |
19702265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 1274980 - 1275021
Alignment:
| Q |
125 |
atatgagttgtctgatcttcatccaactatcaagatccctta |
166 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||||||||||| |
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|
| T |
1274980 |
atatgagttgtttgatcttcaactaactatcaagatccctta |
1275021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 484 - 549
Target Start/End: Complemental strand, 34501855 - 34501790
Alignment:
| Q |
484 |
atgtgaaagtgactcggataagtcattggtgcagcaactcacatcagacactataattgaggtggt |
549 |
Q |
| |
|
|||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34501855 |
atgtgaaagtaactcagataagtcactggtgcagcaactcacatcagacactataattgaggtggt |
34501790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 103
Target Start/End: Complemental strand, 9634223 - 9634193
Alignment:
| Q |
73 |
ttggatgaagatcagatgacttgtattttaa |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
9634223 |
ttggatgaagatcagatgacttgtattttaa |
9634193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 484 - 549
Target Start/End: Complemental strand, 3570726 - 3570661
Alignment:
| Q |
484 |
atgtgaaagtgactcggataagtcattggtgcagcaactcacatcagacactataattgaggtggt |
549 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
3570726 |
atgtgaaagtgactcagataagtcactggtgcagcaactcacatcagacattataattgaggtggt |
3570661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 485 - 549
Target Start/End: Original strand, 21371542 - 21371606
Alignment:
| Q |
485 |
tgtgaaagtgactcggataagtcattggtgcagcaactcacatcagacactataattgaggtggt |
549 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
21371542 |
tgtgaaagtgactcagataagtcactggtgcagcaactcacatcagacagtataattgaggtggt |
21371606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 484 - 532
Target Start/End: Original strand, 40646434 - 40646482
Alignment:
| Q |
484 |
atgtgaaagtgactcggataagtcattggtgcagcaactcacatcagac |
532 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
40646434 |
atgtgaaagtgactcaaataagtcaatggtgcagcaactcacatcagac |
40646482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 485 - 549
Target Start/End: Complemental strand, 11766446 - 11766382
Alignment:
| Q |
485 |
tgtgaaagtgactcggataagtcattggtgcagcaactcacatcagacactataattgaggtggt |
549 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11766446 |
tgtgaaagtgactcagataagtcactggtgcagcaactcacatcagacagtataattgaggtggt |
11766382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 515 - 549
Target Start/End: Complemental strand, 4060821 - 4060787
Alignment:
| Q |
515 |
cagcaactcacatcagacactataattgaggtggt |
549 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
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|
| T |
4060821 |
cagcaactcaaatcagacactataattgaggtggt |
4060787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 485 - 547
Target Start/End: Original strand, 9109294 - 9109356
Alignment:
| Q |
485 |
tgtgaaagtgactcggataagtcattggtgcagcaactcacatcagacactataattgaggtg |
547 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||| |
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|
| T |
9109294 |
tgtgaaagtgactctgataagtcactggtgcagcaactcacatcagacactataactgaggtg |
9109356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 654 - 695
Alignment:
| Q |
125 |
atatgagttgtctgatcttcatccaactatcaagatccctta |
166 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||||||||||| |
|
|
| T |
654 |
atatgagttgtttgatcttcaactaactatcaagatccctta |
695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 988 - 1029
Alignment:
| Q |
125 |
atatgagttgtctgatcttcatccaactatcaagatccctta |
166 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||||||||||| |
|
|
| T |
988 |
atatgagttgtttgatcttcaactaactatcaagatccctta |
1029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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