View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1492_low_21 (Length: 439)

Name: NF1492_low_21
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1492_low_21
NF1492_low_21
[»] chr6 (6 HSPs)
chr6 (91-424)||(5981252-5981585)
chr6 (10-82)||(5981618-5981690)
chr6 (91-129)||(5981631-5981669)
chr6 (41-75)||(15057112-15057146)
chr6 (37-75)||(24360490-24360528)
chr6 (31-71)||(5981547-5981587)
[»] chr4 (6 HSPs)
chr4 (161-424)||(13025552-13025816)
chr4 (28-75)||(11392395-11392442)
chr4 (41-75)||(35297496-35297530)
chr4 (28-61)||(11402144-11402177)
chr4 (27-67)||(6608362-6608402)
chr4 (31-71)||(9712953-9712993)
[»] chr7 (5 HSPs)
chr7 (27-71)||(42901366-42901410)
chr7 (40-71)||(46282894-46282925)
chr7 (41-75)||(17623273-17623307)
chr7 (45-82)||(6980892-6980929)
chr7 (31-72)||(46206689-46206730)
[»] chr8 (3 HSPs)
chr8 (31-67)||(43465103-43465139)
chr8 (40-75)||(31470841-31470876)
chr8 (38-75)||(7931548-7931585)
[»] chr1 (2 HSPs)
chr1 (41-73)||(44382433-44382465)
chr1 (31-75)||(48541265-48541309)
[»] chr3 (2 HSPs)
chr3 (41-75)||(53299825-53299859)
chr3 (41-73)||(26960937-26960969)
[»] chr2 (3 HSPs)
chr2 (37-75)||(20443260-20443298)
chr2 (41-74)||(18182529-18182562)
chr2 (43-75)||(1355990-1356022)


Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-153; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 91 - 424
Target Start/End: Complemental strand, 5981585 - 5981252
Alignment:
Q  91 cttgtgatattgtggttggtcaatgccacgcaagtgctacggttaccacgtataaatagaaaacttctagaccgttttcacaaacacaacacccactttt 190  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5981585 cttgtgatattgtggttggtcaatgtcacgcaagtgctacggttaccacttataaatagaaaacttctagaccgttttcacaaacacaacacccactttt 5981486  T
Q  191 gaaatccaaaaannnnnnnnnnnnnagtaacagaaacttcagaaaacaaaaacctttgtgtcactcaaaaaatgtatgaattggttttgaaagcaaaact 290  Q
    ||||||||||||             |||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  5981485 gaaatccaaaaaacacacacacacaagtaacagaaacttcaaaaaacaaaaacttttgtgtcactcaaaaaatgtctgaattggttttgaaagcaaaact 5981386  T
Q  291 caaagaactcgaatcaattctcactgaaggaatactacgtgatccaaattcacaagaagaaatagaacaaaaatttgcattcatgtcaaaccttatacat 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5981385 caaagaactcgaatcaattctcactgaaggaatactacgtgatccaaattcacaagaagaaatagaacaaaaatttgcattcatgtcaaaccttatacat 5981286  T
Q  391 gctgaatttgaatcatctgacccatcatcaaatc 424  Q
    ||||||||||||||||||||||||||||||||||    
T  5981285 gctgaatttgaatcatctgacccatcatcaaatc 5981252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 5981690 - 5981618
Alignment:
Q  10 gcagagattacagttaccggatagcatttgggtgacattggccaaccacaatatcacaagtgtacagacaaac 82  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  5981690 gcagagattacagttaccggatagcacttgggtgacattgaccaaccacaatatcacaagtgtacagacaaac 5981618  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 5981631 - 5981669
Alignment:
Q  91 cttgtgatattgtggttggtcaatgccacgcaagtgcta 129  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  5981631 cttgtgatattgtggttggtcaatgtcacccaagtgcta 5981669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 75
Target Start/End: Complemental strand, 15057146 - 15057112
Alignment:
Q  41 gtgacattggccaaccacaatatcacaagtgtaca 75  Q
    ||||||||||||||||| |||||||||||||||||    
T  15057146 gtgacattggccaaccaaaatatcacaagtgtaca 15057112  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 24360528 - 24360490
Alignment:
Q  37 ttgggtgacattggccaaccacaatatcacaagtgtaca 75  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  24360528 ttgggtgacattgatcaaccacaatatcacaagtgtaca 24360490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 5981547 - 5981587
Alignment:
Q  31 tagcatttgggtgacattggccaaccacaatatcacaagtg 71  Q
    ||||| ||| ||||||||| |||||||||||||||||||||    
T  5981547 tagcacttgcgtgacattgaccaaccacaatatcacaagtg 5981587  T

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Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 161 - 424
Target Start/End: Complemental strand, 13025816 - 13025552
Alignment:
Q  161 accgttttcacaaacacaacacccacttttgaaatccaaaaannnnnnnnnnnnnagtaacagaaacttcagaaaacaaaaacctttgtgtcactcaaaa 260  Q
    |||||||||||||||||||||||||||||||||||||||||              |||||| ||||| ||| ||||| ||| | ||||||||||||||||    
T  13025816 accgttttcacaaacacaacacccacttttgaaatccaaaa---cacacacacaaagtaaccgaaacctcaaaaaaccaaaccttttgtgtcactcaaaa 13025720  T
Q  261 aa-tgtatgaattgg---ttttgaaagcaaaactcaaagaactcgaatcaattctcactgaaggaatactacgtgatccaaattcacaagaagaaataga 356  Q
    || ||  | | ||     |||||||  |||||||||||||| | |||||||| ||    || |||||| |||||| |||| ||||||| ||||| |||||    
T  13025719 aaatggctaacttacaaattttgaagacaaaactcaaagaagtggaatcaatgcttgaagatggaataatacgtggtccacattcacatgaagacataga 13025620  T
Q  357 acaaaaatttgcattcatgtcaaaccttatacatgctgaatttgaatcatctgacccatcatcaaatc 424  Q
    ||||||| ||||||||||| ||||||||  |    |||||||| |||||||| |||||||||||||||    
T  13025619 acaaaaacttgcattcatgacaaaccttgcagccactgaatttaaatcatctaacccatcatcaaatc 13025552  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 11392442 - 11392395
Alignment:
Q  28 ggatagcatttgggtgacattggccaaccacaatatcacaagtgtaca 75  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||    
T  11392442 ggatagcacttgggtgacattggccaaccacaatgtcacaagtgtaca 11392395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 75
Target Start/End: Original strand, 35297496 - 35297530
Alignment:
Q  41 gtgacattggccaaccacaatatcacaagtgtaca 75  Q
    ||||||||| |||||||||||||||||||||||||    
T  35297496 gtgacattgaccaaccacaatatcacaagtgtaca 35297530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 11402177 - 11402144
Alignment:
Q  28 ggatagcatttgggtgacattggccaaccacaat 61  Q
    |||||||| |||||||||||||||||||||||||    
T  11402177 ggatagcacttgggtgacattggccaaccacaat 11402144  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 6608362 - 6608402
Alignment:
Q  27 cggatagcatttgggtgacattggccaaccacaatatcaca 67  Q
    ||||||||| ||||||||||||||||||||| ||| |||||    
T  6608362 cggatagcaattgggtgacattggccaaccataatgtcaca 6608402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 9712993 - 9712953
Alignment:
Q  31 tagcatttgggtgacattggccaaccacaatatcacaagtg 71  Q
    ||||| ||||||||||||| ||||||||||| |||||||||    
T  9712993 tagcacttgggtgacattgaccaaccacaatgtcacaagtg 9712953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 42901366 - 42901410
Alignment:
Q  27 cggatagcatttgggtgacattggccaaccacaatatcacaagtg 71  Q
    |||||||||||||| |||||||| |||||||||||||||||||||    
T  42901366 cggatagcatttggatgacattgaccaaccacaatatcacaagtg 42901410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 71
Target Start/End: Original strand, 46282894 - 46282925
Alignment:
Q  40 ggtgacattggccaaccacaatatcacaagtg 71  Q
    ||||||||||||||||||||||||||||||||    
T  46282894 ggtgacattggccaaccacaatatcacaagtg 46282925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 75
Target Start/End: Complemental strand, 17623307 - 17623273
Alignment:
Q  41 gtgacattggccaaccacaatatcacaagtgtaca 75  Q
    ||||||||||| |||||||||||||||||||||||    
T  17623307 gtgacattggcaaaccacaatatcacaagtgtaca 17623273  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 6980892 - 6980929
Alignment:
Q  45 cattggccaaccacaatatcacaagtgtacagacaaac 82  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  6980892 cattggccaaccacaatgtcacaagtgtacaaacaaac 6980929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 46206730 - 46206689
Alignment:
Q  31 tagcatttgggtgacattggccaaccacaatatcacaagtgt 72  Q
    ||||| ||||||||||||||||||||||||| |||| |||||    
T  46206730 tagcacttgggtgacattggccaaccacaatgtcacgagtgt 46206689  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 43465103 - 43465139
Alignment:
Q  31 tagcatttgggtgacattggccaaccacaatatcaca 67  Q
    ||||| |||||||||||||||||||||||||||||||    
T  43465103 tagcacttgggtgacattggccaaccacaatatcaca 43465139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 75
Target Start/End: Complemental strand, 31470876 - 31470841
Alignment:
Q  40 ggtgacattggccaaccacaatatcacaagtgtaca 75  Q
    |||||||||||||||||||||| |||||||||||||    
T  31470876 ggtgacattggccaaccacaatgtcacaagtgtaca 31470841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 7931548 - 7931585
Alignment:
Q  38 tgggtgacattggccaaccacaatatcacaagtgtaca 75  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  7931548 tgggtgacattgaccaaccacaatgtcacaagtgtaca 7931585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 44382465 - 44382433
Alignment:
Q  41 gtgacattggccaaccacaatatcacaagtgta 73  Q
    |||||||||||||||||||||||||||||||||    
T  44382465 gtgacattggccaaccacaatatcacaagtgta 44382433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 48541309 - 48541265
Alignment:
Q  31 tagcatttgggtgacattggccaaccacaatatcacaagtgtaca 75  Q
    |||||||| ||||| |||||| ||| |||||||||||||||||||    
T  48541309 tagcatttaggtgatattggctaactacaatatcacaagtgtaca 48541265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 75
Target Start/End: Complemental strand, 53299859 - 53299825
Alignment:
Q  41 gtgacattggccaaccacaatatcacaagtgtaca 75  Q
    ||||||||||||||||||||| |||||||||||||    
T  53299859 gtgacattggccaaccacaatgtcacaagtgtaca 53299825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 26960969 - 26960937
Alignment:
Q  41 gtgacattggccaaccacaatatcacaagtgta 73  Q
    ||||||||||||||||||||| |||||||||||    
T  26960969 gtgacattggccaaccacaatgtcacaagtgta 26960937  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 20443260 - 20443298
Alignment:
Q  37 ttgggtgacattggccaaccacaatatcacaagtgtaca 75  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  20443260 ttgggtgacattgatcaaccacaatatcacaagtgtaca 20443298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 18182529 - 18182562
Alignment:
Q  41 gtgacattggccaaccacaatatcacaagtgtac 74  Q
    ||||||||||||||||||||| ||||||||||||    
T  18182529 gtgacattggccaaccacaatgtcacaagtgtac 18182562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 1356022 - 1355990
Alignment:
Q  43 gacattggccaaccacaatatcacaagtgtaca 75  Q
    ||||||||||||||||||| |||||||||||||    
T  1356022 gacattggccaaccacaatgtcacaagtgtaca 1355990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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