View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_low_22 (Length: 436)
Name: NF1492_low_22
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 15 - 420
Target Start/End: Original strand, 48272256 - 48272660
Alignment:
| Q |
15 |
tctgagagtattggttctgttaaccctgaagaagttaaatctacaccatccagaaataggaggaattcagtttcctaaaagtagctattggttcactttc |
114 |
Q |
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| T |
48272256 |
tctgagagtattggttctgttaaccctgaagaagttaaatctacaccatccagaaataggaggaattcagtttcctaaaagtagctattggttcactttc |
48272355 |
T |
|
| Q |
115 |
ttgtcttttcttctaatgtttattttctctcnnnnnnnnngggttagtttctttatgtccagaggacctcaaaactagtggtttatctctttctaaatta |
214 |
Q |
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| T |
48272356 |
ttgtcttttcttctaatgtttattttctctctttttttt-gggttagtttctttatgtccagaggacctcaaaactagtggtttatctctttctaaatta |
48272454 |
T |
|
| Q |
215 |
agttaaagtatatatagtttaaaataggaaaattgtgaagaatgcaactcatgtagtaaaaccttggcatctttcctatcaaagtatttgtttacttatc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48272455 |
agttaaagtatatatagtttaaaataggaaaattgtgaagaatgcaactcatgtagtaaaaccttggcatctttcctatcaaagtagttgtttacttatc |
48272554 |
T |
|
| Q |
315 |
aatagattaatgaaagtactgaaggagatgattttactgatatatttgggattagttctgctggtactcgggtcagtgatataattgtgtacactgatgg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48272555 |
aatagattaatgaaagtactgaaggagatgattttactgatatatttgggattagttctgctggtactcgggtcagtgatataattgtgtacactgatgg |
48272654 |
T |
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| Q |
415 |
tgtaac |
420 |
Q |
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|||||| |
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| T |
48272655 |
tgtaac |
48272660 |
T |
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