View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1492_low_26 (Length: 404)

Name: NF1492_low_26
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1492_low_26
NF1492_low_26
[»] chr5 (2 HSPs)
chr5 (16-326)||(16053474-16053769)
chr5 (352-393)||(16053794-16053835)
[»] chr3 (13 HSPs)
chr3 (139-316)||(36309760-36309936)
chr3 (145-306)||(36321276-36321437)
chr3 (127-310)||(36333929-36334112)
chr3 (143-276)||(36328106-36328239)
chr3 (127-278)||(36313852-36314000)
chr3 (142-276)||(30227292-30227426)
chr3 (144-276)||(30201117-30201249)
chr3 (142-276)||(30223041-30223175)
chr3 (142-276)||(30230282-30230416)
chr3 (145-215)||(29751856-29751926)
chr3 (143-276)||(29856790-29856923)
chr3 (142-201)||(30239053-30239112)
chr3 (143-215)||(29649039-29649111)
[»] chr7 (2 HSPs)
chr7 (142-276)||(16644743-16644877)
chr7 (142-276)||(17619104-17619238)
[»] chr8 (1 HSPs)
chr8 (144-276)||(14934506-14934638)
[»] chr1 (1 HSPs)
chr1 (137-276)||(16955662-16955801)


Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 16 - 326
Target Start/End: Original strand, 16053474 - 16053769
Alignment:
Q  16 attgcagcttcgttcaatagcattgcaacaaatcttcaccatttcctctttatcataatcattattggacaccctcccaaagaaaaaattattatagtat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  16053474 attgcagcttcgttcaatagcattgcaacaaatcttcaccatttcctctttatcataatcattattggacaccttccaaaagaaaaaattattatagtat 16053573  T
Q  116 gaactataatcgcacatgcagatagagcgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaa 215  Q
    |||||||||||||||||||||||||               |||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  16053574 gaactataatcgcacatgcagatag---------------gatccttgcaaatgttccaccaaagagggcacactccgcatgcacttgttaaaatttcaa 16053658  T
Q  216 atgcaccaagcctctgaaggatatttgatgtcaaatctctaggaagatcaagccaatttggtcctgctgggctctcactttcaacttccattgttaaaat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16053659 atgcaccaagcctctgaaggatatttgatgtcaaatctctaggaagatcaagccaatttggtcctgctgtgctctcactttcaacttccattgttaaaat 16053758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 393
Target Start/End: Original strand, 16053794 - 16053835
Alignment:
Q  352 acgtttgataactgtacactgaccttttatttatagacctat 393  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16053794 acgtttgataactgtacactgaccttttatttatagacctat 16053835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 139 - 316
Target Start/End: Original strand, 36309760 - 36309936
Alignment:
Q  139 agagcgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagcctctgaaggata 238  Q
    |||||||||||| |||||||| |||||||||||||||||  | || || |||| ||||||||| |||| ||||||||| ||||||||||| ||||||||     
T  36309760 agagcgccacattagaggatccttgcaaatgttccaccattgcggacacactc-gcatgcactcgtcacaatttcaaacgcaccaagcctatgaaggatg 36309858  T
Q  239 tttgatgtcaaatctctaggaagatcaagccaatttggtcctgctgggctctcactttcaacttccattgttaaaata 316  Q
    |||| |||||||||| ||||||||||||||||||| || |||  || ||| || ||||| ||||||||||||| ||||    
T  36309859 tttgctgtcaaatctataggaagatcaagccaattcggccctcttgtgctttccctttccacttccattgttagaata 36309936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 145 - 306
Target Start/End: Original strand, 36321276 - 36321437
Alignment:
Q  145 ccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagcctctgaaggatatttgat 244  Q
    ||||||||| ||||| |||||||||||| ||||  | ||||| |||| ||| ||||| |||| ||||||||| | |||||||||||||||||| |||  |    
T  36321276 ccacatgagtggatccttgcaaatgttcaaccattgtgggcatactcggcaagcactcgtcacaatttcaaacgtaccaagcctctgaaggatgttttct 36321375  T
Q  245 gtcaaatctctaggaagatcaagccaatttggtcctgctgggctctcactttcaacttccat 306  Q
    |||||||| || ||||||||||||||||||||||||| || ||||||||||||  |||||||    
T  36321376 gtcaaatcacttggaagatcaagccaatttggtcctgttgtgctctcactttcctcttccat 36321437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 127 - 310
Target Start/End: Original strand, 36333929 - 36334112
Alignment:
Q  127 gcacatgcagatagagcgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagc 226  Q
    ||||||||  |||| |||||||||||||||||| |||||||||||||||||  | || || |||| ||| ||||| |||| |||||| || | |||||||    
T  36333929 gcacatgcgaatagtgcgccacatgagaggatccttgcaaatgttccaccattgtggacacactcggcaagcactcgtcacaatttccaacgtaccaagc 36334028  T
Q  227 ctctgaaggatatttgatgtcaaatctctaggaagatcaagccaatttggtcctgctgggctctcactttcaacttccattgtt 310  Q
    ||||||||||| |||| ||||||||| || | ||| ||| ||||||  || |||| || ||||| ||||||  ||| |||||||    
T  36334029 ctctgaaggatgtttgctgtcaaatcactcgtaaggtcaggccaatacggacctgttgtgctctaactttcctctttcattgtt 36334112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 143 - 276
Target Start/End: Original strand, 36328106 - 36328239
Alignment:
Q  143 cgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagcctctgaaggatatttg 242  Q
    |||||||||| |||||| ||||||| |||||||||  | ||| | |||| |||||||||  ||| ||||||||| | |||||||||||||||||| ||||    
T  36328106 cgccacatgacaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgtttg 36328205  T
Q  243 atgtcaaatctctaggaagatcaagccaatttgg 276  Q
     |||||||||  | |||||||||| |||||||||    
T  36328206 ctgtcaaatcaatcggaagatcaaaccaatttgg 36328239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 278
Target Start/End: Original strand, 36313852 - 36314000
Alignment:
Q  127 gcacatgcagatagagcgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagc 226  Q
    ||||||||  |||| |||||||||||||||||| |||||||| ||| ||||  ||| ||| || |  |||||||| |||| ||||||||    |||||||    
T  36313852 gcacatgcgaatagtgcgccacatgagaggatccttgcaaatcttcaaccattgagtgcatacacaacatgcactcgtcacaatttcaat---accaagc 36313948  T
Q  227 ctctgaaggatatttgatgtcaaatctctaggaagatcaagccaatttggtc 278  Q
    |||||||| || |||  ||||||||| || ||||||||||||||||||||||    
T  36313949 ctctgaagaatgttttctgtcaaatcacttggaagatcaagccaatttggtc 36314000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 142 - 276
Target Start/End: Complemental strand, 30227426 - 30227292
Alignment:
Q  142 gcgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagcctctgaaggatattt 241  Q
    |||||||||||||||||| ||||||||||||||| | ||||| || |||   ||||||||||||| ||| || |  | ||||||||| ||||| || |||    
T  30227426 gcgccacatgagaggatccttgcaaatgttccactatagaggacacacttgacatgcacttgtcacaatctcgatggtaccaagcctttgaagaatgttt 30227327  T
Q  242 gatgtcaaatctctaggaagatcaagccaatttgg 276  Q
    | ||| |  ||||||||||| ||||||||||||||    
T  30227326 gttgtgatgtctctaggaagttcaagccaatttgg 30227292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 276
Target Start/End: Complemental strand, 30201249 - 30201117
Alignment:
Q  144 gccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagcctctgaaggatatttga 243  Q
    |||||||||||||||| ||||||||||||||||| ||||| || |||   ||||||||||||| ||||||||  | || |||||| ||||| || |||      
T  30201249 gccacatgagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgtcacaatttcaatggtactaagcctttgaagaatgttttc 30201150  T
Q  244 tgtcaaatctctaggaagatcaagccaatttgg 276  Q
    ||| |  ||| ||||||| ||||||||||||||    
T  30201149 tgtaatgtctttaggaagttcaagccaatttgg 30201117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 142 - 276
Target Start/End: Complemental strand, 30223175 - 30223041
Alignment:
Q  142 gcgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagcctctgaaggatattt 241  Q
    |||||||||||||||||| ||||||||||||||||||  ||| || ||   || |||  |  ||| |||||||| || ||||||||| || || || |||    
T  30223175 gcgccacatgagaggatccttgcaaatgttccaccaataaggacacacattgcgtgccttcttcagaatttcaactggaccaagcctttggagaatgttt 30223076  T
Q  242 gatgtcaaatctctaggaagatcaagccaatttgg 276  Q
    ||||| |  ||||||||||| ||||||||||||||    
T  30223075 gatgtgatgtctctaggaagctcaagccaatttgg 30223041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 142 - 276
Target Start/End: Complemental strand, 30230416 - 30230282
Alignment:
Q  142 gcgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagcctctgaaggatattt 241  Q
    |||||||||| ||||||| ||||||||| ||||||||  ||| || ||   || |||| ||||||||||||| |   |||||||||| || || || |||    
T  30230416 gcgccacatgcgaggatccttgcaaatgctccaccaataaggacacacattgcgtgcatttgtcaaaatttcgaccacaccaagcctttggagaatgttt 30230317  T
Q  242 gatgtcaaatctctaggaagatcaagccaatttgg 276  Q
    ||||| |  ||||||||||| ||||||||||||||    
T  30230316 gatgtaatgtctctaggaagctcaagccaatttgg 30230282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 29751926 - 29751856
Alignment:
Q  145 ccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaa 215  Q
    ||||||||||||||| ||||||| ||||||||||||||| |||||    | ||||||||||| ||||||||    
T  29751926 ccacatgagaggatccttgcaaacgttccaccaaagaggacaaacattacgtgcacttgtcacaatttcaa 29751856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 276
Target Start/End: Complemental strand, 29856923 - 29856790
Alignment:
Q  143 cgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagcctctgaaggatatttg 242  Q
    ||||||| ||||||||| || || |||| |||||| ||||| ||||||   ||||||||| |||  ||||||| || | ||||||| |||||||| ||||    
T  29856923 cgccacaggagaggatctttacatatgtcccaccatagaggacaaacttgacatgcacttttcacgatttcaattgtatcaagcctttgaaggatgtttg 29856824  T
Q  243 atgtcaaatctctaggaagatcaagccaatttgg 276  Q
     ||| |  |||||  |||| ||||||||||||||    
T  29856823 ctgtgatttctctcagaagttcaagccaatttgg 29856790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 30239112 - 30239053
Alignment:
Q  142 gcgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcact 201  Q
    |||||||||||||||||| ||||| ||||||||||| ||||| || |||  |||||||||    
T  30239112 gcgccacatgagaggatccttgcatatgttccaccatagaggacatactaggcatgcact 30239053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 29649111 - 29649039
Alignment:
Q  143 cgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaa 215  Q
    ||||||||||||||||| || |||||||||||| | ||||| || |||  ||||||| |||| | ||||||||    
T  29649111 cgccacatgagaggatccttacaaatgttccacgatagaggacatactaggcatgcatttgttacaatttcaa 29649039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 142 - 276
Target Start/End: Original strand, 16644743 - 16644877
Alignment:
Q  142 gcgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagcctctgaaggatattt 241  Q
    ||||||||||||||| || ||||||||||||||||| ||||  || |||  | |||||||||||| |||||||| ||||  |||||| ||||| || |||    
T  16644743 gcgccacatgagaggttccttgcaaatgttccaccatagagcacacactagggatgcacttgtcacaatttcaactgcattaagcctttgaagaatgttt 16644842  T
Q  242 gatgtcaaatctctaggaagatcaagccaatttgg 276  Q
      ||| | |||||||||||| ||||||||||||||    
T  16644843 tgtgtgatatctctaggaaggtcaagccaatttgg 16644877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 142 - 276
Target Start/End: Original strand, 17619104 - 17619238
Alignment:
Q  142 gcgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagcctctgaaggatattt 241  Q
    ||||||||||||||| || ||||||||||||||||| ||||  || |||  | |||||||||||| |||||||| ||||  |||||| ||||| || |||    
T  17619104 gcgccacatgagaggttccttgcaaatgttccaccatagagcacacactagggatgcacttgtcacaatttcaactgcattaagcctttgaagaatgttt 17619203  T
Q  242 gatgtcaaatctctaggaagatcaagccaatttgg 276  Q
      ||| | |||||||||||| ||||||||||||||    
T  17619204 tgtgtgatatctctaggaaggtcaagccaatttgg 17619238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 276
Target Start/End: Original strand, 14934506 - 14934638
Alignment:
Q  144 gccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagcctctgaaggatatttga 243  Q
    |||||||| ||||||| ||| |||| ||||||||||||||||| |||   |||||||| | ||| |||||||  ||||||||||| || || || ||||     
T  14934506 gccacatgtgaggatccttgaaaatattccaccaaagagggcacacttgacatgcactagccaatatttcaatggcaccaagcctttggagaatgtttgc 14934605  T
Q  244 tgtcaaatctctaggaagatcaagccaatttgg 276  Q
     |||| |||||| ||||| ||||||||||||||    
T  14934606 agtcacatctcttggaagttcaagccaatttgg 14934638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 276
Target Start/End: Original strand, 16955662 - 16955801
Alignment:
Q  137 atagagcgccacatgagaggatcattgcaaatgttccaccaaagagggcaaactccgcatgcacttgtcaaaatttcaaatgcaccaagcctctgaagga 236  Q
    |||| |||||||||||||||||| |||||||| |||||||| | |||||| |||   ||| ||||||| | ||||||||  | | |||||||||| || |    
T  16955662 atagtgcgccacatgagaggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaagcctctggagaa 16955761  T
Q  237 tatttgatgtcaaatctctaggaagatcaagccaatttgg 276  Q
    | |||  || ||||||| | || || ||||||||||||||    
T  16955762 tgtttattgccaaatcttttggtagttcaagccaatttgg 16955801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University