View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_low_28 (Length: 378)
Name: NF1492_low_28
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 6412224 - 6412595
Alignment:
| Q |
1 |
gagtggaggaagagatttattgaagaaaatttcaatgttagggatgcttctagtattttgtcaataccgctttataaggtggtggatcaagaagatatag |
100 |
Q |
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| T |
6412224 |
gagtggaggaagagatttatt-aagaaaatttcaatgttagggatgcttctagtattttgtcaataccgctttataaggtggtggatcaagaagatatag |
6412322 |
T |
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| Q |
101 |
caagctcaaagtttagtcccaccgaatttacagtgtaaagtttggatattactacgctaaggaacagttgatagacaatagcgaatactgaaaggaaaac |
200 |
Q |
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| T |
6412323 |
caagctcaaagtttagtcccaccgaatttacagtgtaaagtttggatattactacgctaaggaacagttgatggacaatagcgaatactgaaaggaaaac |
6412422 |
T |
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| Q |
201 |
tatatgaaaaagctatggggcttgaaaaatgagtgtaatctacttgacaaagacttcaacatatatagagaggtacaatgcacagataaatgtgtctttt |
300 |
Q |
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| T |
6412423 |
tatgtgaaaaagctatggggcttgaaaaatgagtgtaatctacttgacaaagacttcaac----atagagaggtacaatgcacagataaatgtgtctttt |
6412518 |
T |
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| Q |
301 |
gtgagt-------------aatgattgacatgtgtttctttggatgttggaaagcgcaagagacatggatggaagtg |
364 |
Q |
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| T |
6412519 |
gtgagtatctactgatgagaatgattgacatgtgtttctttgaatgtaggaaagcgcaagagacatggatggaagtg |
6412595 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 13382297 - 13382218
Alignment:
| Q |
42 |
ggatgcttctagtattttgtcaataccgctttataaggtggtggatcaagaagatatagcaagctcaaagtttagtcccaccg |
124 |
Q |
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| T |
13382297 |
ggatgcctctaatattttatcaataccgctttataaggatg---atcaagaagatatagtaagttcaaaatctagtcctaccg |
13382218 |
T |
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