View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_low_29 (Length: 375)
Name: NF1492_low_29
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 357
Target Start/End: Original strand, 2833455 - 2833799
Alignment:
| Q |
12 |
tgagatgaacctaccttagtagcattgaattgaagcttaaaaacagctttaatcctattcttctcacttctccattttgaagaacgaaacatcttcactt |
111 |
Q |
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| T |
2833455 |
tgagatgaacctaccttagtagcattgaattgaagcttaaaaacagctttaatcctattcttctcacttctccattttgaagaacgaaacatcttcactt |
2833554 |
T |
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| Q |
112 |
cacatcacaaaactcacgtttcaaataagctcttaatcattttcatctctcccaaacaactactccaccaactaaaacactnnnnnnnnnnncactaaac |
211 |
Q |
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| T |
2833555 |
cacatcacaaaactcacgtttcaaataagctcttaatcattttcatctctcccaaacaattactccaccaactaaaacact-aaaaaaaaaacactaaac |
2833653 |
T |
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| Q |
212 |
tcggtggttcaactcgttggtatgaagcaaaacaaagtaacgtagcgtgtaagaacagaacgagttaggaaactaagaagaaaacaagagatcttatgtt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
2833654 |
tcggtggttcaactcgttggtatgaagcaaaacaaagtaacgtagcgtgtaagaacagaacgagttatgaaactaagaacaaaacaagagatcttatgtt |
2833753 |
T |
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| Q |
312 |
tgtttgtgatattaaggtttgatgttatgtttttgtctcagtttcc |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2833754 |
tgtttgtgatattaaggtttgatgttatgtttttgtctcagtttcc |
2833799 |
T |
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