View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_low_3 (Length: 764)
Name: NF1492_low_3
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 568; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 33 - 616
Target Start/End: Original strand, 6701181 - 6701764
Alignment:
| Q |
33 |
tgcacatacctgttctggccggagaaaaacaacattccccaaaacgatgacgtttccagattcatccaatatctttgcaaactcaacaccttgttcatga |
132 |
Q |
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| T |
6701181 |
tgcacatacctgttctggccggagaaaaacaacattccccaaaacgatgacgtttccagattcatccaatatctttgcaaactcaacaccttgttcatga |
6701280 |
T |
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| Q |
133 |
ttctcacacgattcaacacagatcctcaaaaactcaccgtaactaactgaattctccgaaacctctctcagtttcctcttcaacttctccatttgcgatg |
232 |
Q |
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| T |
6701281 |
ttctcacacgattcaacgcagatcctcaaaaactcaccgtaactaactgaattctccgaaacctctctcagtttcctcttcaacttctccatttgcgatg |
6701380 |
T |
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| Q |
233 |
ctttcagaatcttcctcgcatcctccaccgtgaacttcgccggcgatgttgccttttccggcgccggtgcataattgagatcaaggaaacgatcaccggt |
332 |
Q |
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| T |
6701381 |
ctttcagaatcttcctcgcatcctccaccgtgaacttcgccggcgatgttgccttttccggcgccggtgcaaaattgagatcaaggaaacgatcaccggt |
6701480 |
T |
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| Q |
333 |
gttaatgcctttgagtttttccctgagtttttctccgacagggagtgagagaaactccgggaggctcaccgtgccggagtgatgcacagctcgccgggga |
432 |
Q |
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| T |
6701481 |
gttaatgcctttgagtttttccctgagtttttctccgacagggagtgagagaaactccgggaggctcaccgtgccggagtgatgcacagctcgccgggga |
6701580 |
T |
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| Q |
433 |
agaaaacggcggaaatagtttctgtttttggtttccggtgatgagagatactcacgatggaaatttgctttagaagcgtttggaggaactatggttcgtt |
532 |
Q |
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| T |
6701581 |
agaaaacggcggaaatagtttctgtttttggtttccggtgatgagagatactcacgatggaaatttgctttagaagcgtttggaggaactatggtttgtt |
6701680 |
T |
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| Q |
533 |
ctaatgttgttgaggacggcgtcagagatttgacgccgtcgaaaagacgcattgtaaagagtttccgaagcgccattgatgaaa |
616 |
Q |
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| T |
6701681 |
ctaatgttgttgaggacggcgtcagagatttgacgccgtcgaaaagacgctttgtaaagagtttccgaagcgccattgatgaaa |
6701764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 662 - 748
Target Start/End: Original strand, 6701814 - 6701900
Alignment:
| Q |
662 |
ttagattttattgcatggtgtgtagtaagagtgaagagattttgcaggctcttgagaagagtaggaggcaggtttcgttgtttatat |
748 |
Q |
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| T |
6701814 |
ttagatgttattgcatagtgtatagtaagagtgaagagattttgcaggctcttgagaagagtaagaggcaggtttcgttgtttatat |
6701900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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