View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1492_low_30 (Length: 372)
Name: NF1492_low_30
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_low_30 |
 | |
|
| [»] scaffold0172 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 1553469 - 1553819
Alignment:
| Q |
18 |
cttattgttcaatccatgttcatgtttacttataaacataaatcactttatattcaactcagttttcacttgttattgcggcagaataaaacgcacgctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1553469 |
cttattgttcaatccatgttcatgtttacttataaacataaatcactttatattcaactcagttttcacttgttattgcggcagaataaaacccacgctt |
1553568 |
T |
|
| Q |
118 |
agtttctttctgaattatgacttgtttaatgtttttcaattgtagactaccaggtgactttggttttgatccactaggccttggcaaggacccagcattt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1553569 |
agtttctttctgaattatgacttgtttaatgtttttcaattgtagactaccaggtgactttggttttgacccactaggccttggcaaggacccagcattt |
1553668 |
T |
|
| Q |
218 |
ctgaaatggtacagagaagctgagcttattcatggaaggtgggcaatggctgcagttctaggcatctttgttggtcaagcatggagtggagttccatggt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1553669 |
ctgaaatggtacagagaagctgagcttattcatggaaggtgggcaatggctgcagttctaggcatctttgttggtcaagcatggagtggagttccatggt |
1553768 |
T |
|
| Q |
318 |
ttgaggctggagctgaccccaatgcaattgctccattctcctttgctactc |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1553769 |
ttgaggctggagctgaccccaatgcaattgctccattctcctttggtactc |
1553819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 12110924 - 12110956
Alignment:
| Q |
51 |
aaacataaatcactttatattcaactcagtttt |
83 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
12110924 |
aaacataaatcactttatattcaactcactttt |
12110956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 15317 - 15285
Alignment:
| Q |
51 |
aaacataaatcactttatattcaactcagtttt |
83 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
15317 |
aaacataaatcactttatattcaactcactttt |
15285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 38510410 - 38510378
Alignment:
| Q |
51 |
aaacataaatcactttatattcaactcagtttt |
83 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
38510410 |
aaacataaatcactttatattcaactcactttt |
38510378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 48045740 - 48045708
Alignment:
| Q |
51 |
aaacataaatcactttatattcaactcagtttt |
83 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
48045740 |
aaacataaatcactttatcttcaactcagtttt |
48045708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University