View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_low_32 (Length: 353)
Name: NF1492_low_32
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 9 - 338
Target Start/End: Original strand, 15571190 - 15571519
Alignment:
| Q |
9 |
acatcatcactaaggtttccctcaaccaaggaatgagccactatgtcctcgtcgtttatcgccacgcttttgctactgcttctatagctccatttgcatt |
108 |
Q |
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| T |
15571190 |
acattatcactaaggtttccctcaaccaaggaatgagccactatgtcctcgtcgtttatcgccacgcttttgctactgcttctatagctccatttgcatt |
15571289 |
T |
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| Q |
109 |
catgtttgagaggtttgtataaacatgttttaacataaagtcacatttttattgcaaattaatatgctaactcttattgtttcatatttgtaggaaaggc |
208 |
Q |
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| T |
15571290 |
catgtttgagaggtttgtataaacatgttttaacataaagtcacatttttattgcaaattaatatgctaactcttaatgtttcatttttgtaggaaaggt |
15571389 |
T |
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| Q |
209 |
caacctaagataacattccgaattttcttgcaaattttcatcctagctcttcttgggttagtctcctctagctagtttaatttgcgttaaaaaagtcgta |
308 |
Q |
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| T |
15571390 |
caacctaagataacattccgaattttcttgcaaattttcgtcctagctcttcttgggttagtctcctctagctactttaattcgcgttaaaaaagtcgta |
15571489 |
T |
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| Q |
309 |
taaattttacattttatctattttgtctct |
338 |
Q |
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| T |
15571490 |
taaattttacattttatctattttgtctct |
15571519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 130
Target Start/End: Complemental strand, 3375803 - 3375714
Alignment:
| Q |
41 |
atgagccactatgtcctcgtcgtttatcgccacgcttttgctactgcttctatagctccatttgcattcatgtttgagaggtttgtataa |
130 |
Q |
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| T |
3375803 |
atgagtcattatgtccttgttgtttatcgccacgcttttgcaaccgttgctatagctccattcgccataatctttgaaaggtttgtataa |
3375714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 3434906 - 3434848
Alignment:
| Q |
41 |
atgagccactatgtcctcgtcgtttatcgccacgcttttgctactgcttctatagctcc |
99 |
Q |
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| T |
3434906 |
atgagtcactatgtcctcgttgtttatcgccatgcttttgcaactattgctatagctcc |
3434848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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