View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1492_low_33 (Length: 347)

Name: NF1492_low_33
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1492_low_33
NF1492_low_33
[»] chr6 (1 HSPs)
chr6 (204-327)||(28178815-28178938)
[»] chr2 (6 HSPs)
chr2 (216-329)||(24188832-24188944)
chr2 (268-329)||(20518515-20518576)
chr2 (216-329)||(27917221-27917334)
chr2 (267-327)||(25460747-25460807)
chr2 (266-327)||(14921316-14921377)
chr2 (234-327)||(22511681-22511774)
[»] chr4 (4 HSPs)
chr4 (216-327)||(19602599-19602710)
chr4 (266-327)||(29438247-29438308)
chr4 (21-60)||(19649190-19649229)
chr4 (280-329)||(1002054-1002103)
[»] chr7 (8 HSPs)
chr7 (223-307)||(21536735-21536819)
chr7 (40-120)||(32850934-32851014)
chr7 (231-329)||(9801365-9801463)
chr7 (231-326)||(9760927-9761022)
chr7 (223-327)||(21544077-21544181)
chr7 (230-327)||(9552890-9552987)
chr7 (21-60)||(45994071-45994110)
chr7 (84-130)||(6230247-6230293)
[»] chr3 (5 HSPs)
chr3 (216-329)||(22488055-22488168)
chr3 (225-315)||(5631839-5631929)
chr3 (266-316)||(26298566-26298616)
chr3 (75-132)||(18068738-18068795)
chr3 (266-330)||(28730852-28730916)
[»] scaffold0011 (1 HSPs)
scaffold0011 (225-327)||(227383-227485)
[»] chr5 (1 HSPs)
chr5 (266-327)||(18281440-18281501)
[»] chr1 (2 HSPs)
chr1 (21-60)||(25503599-25503638)
chr1 (40-111)||(32776053-32776124)
[»] scaffold0065 (1 HSPs)
scaffold0065 (239-316)||(13127-13204)


Alignment Details
Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 204 - 327
Target Start/End: Complemental strand, 28178938 - 28178815
Alignment:
Q  204 aaggttttaggaacatagatttccccgcaattcgcccttgcaaattacgaaggtcccaaaaaatgagttacaaccctaaattcatatttggattcaatta 303  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28178938 aaggttttggggacatagatttccccgcaattcgcccttgcaaattacgaaggttccaaaaaatgagttacaaccctaaattcatatttggattcaatta 28178839  T
Q  304 tatttgaaactaaccaattcacta 327  Q
    |||| |||||||||||||||||||    
T  28178838 tattagaaactaaccaattcacta 28178815  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 216 - 329
Target Start/End: Complemental strand, 24188944 - 24188832
Alignment:
Q  216 acatagatttccccgcaattcgcccttgcaaattacgaaggtcccaaaaaatgagttacaaccctaaattcatatttggattcaattatatttgaaacta 315  Q
    |||||| ||||||||||||||||||||||||||||||| |||||| ||| |||||||   | |||||||||||| || |||||||||||||| |||||||    
T  24188944 acatagctttccccgcaattcgcccttgcaaattacgagggtcccgaaagatgagtt-gtagcctaaattcatacttagattcaattatattagaaacta 24188846  T
Q  316 accaattcactatt 329  Q
    | ||||||||||||    
T  24188845 agcaattcactatt 24188832  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 329
Target Start/End: Original strand, 20518515 - 20518576
Alignment:
Q  268 gagttacaaccctaaattcatatttggattcaattatatttgaaactaaccaattcactatt 329  Q
    |||||| | ||||||||||||| || |||||||||||||| |||||||| ||||||||||||    
T  20518515 gagttatagccctaaattcatacttagattcaattatattagaaactaagcaattcactatt 20518576  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 329
Target Start/End: Original strand, 27917221 - 27917334
Alignment:
Q  216 acatagatttccccgcaattcgcccttgcaaattacgaaggtcccaaaaaatgagttacaaccctaaattcatatttggattcaattatatttgaaacta 315  Q
    |||||| ||||||| |||||| |||||||||||||||| |||||  |||  ||||||| | |||||| |||||| |  |||| ||||||||| |||||||    
T  27917221 acatagctttccccacaattcacccttgcaaattacgagggtcctgaaatgtgagttatagccctaagttcatactcagatttaattatattagaaacta 27917320  T
Q  316 accaattcactatt 329  Q
    | ||| ||| ||||    
T  27917321 agcaagtcaatatt 27917334  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 267 - 327
Target Start/End: Complemental strand, 25460807 - 25460747
Alignment:
Q  267 tgagttacaaccctaaattcatatttggattcaattatatttgaaactaaccaattcacta 327  Q
    ||||||| | ||||||||||||| || |||||||||||||| |||||||| ||||||||||    
T  25460807 tgagttatagccctaaattcatactttgattcaattatattagaaactaagcaattcacta 25460747  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 14921316 - 14921377
Alignment:
Q  266 atgagttacaaccctaaattcatatttggattcaattatatttgaaactaaccaattcacta 327  Q
    |||||||| | || |||||||||| ||  ||||||||||||| |||||||| ||||||||||    
T  14921316 atgagttatagccataaattcatagttaaattcaattatattagaaactaagcaattcacta 14921377  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 327
Target Start/End: Complemental strand, 22511774 - 22511681
Alignment:
Q  234 ttcgcccttgcaaattacgaaggtcccaaaaaatgagttacaaccctaaattcatatttggattcaattatatttgaaactaaccaattcacta 327  Q
    |||||||||||||||||||| |||||| ||| | || ||| |  || ||||||||| |   ||||||||||||| ||||||||  |||||||||    
T  22511774 ttcgcccttgcaaattacgagggtccctaaagacgaattatataccaaaattcatactcatattcaattatattagaaactaagtaattcacta 22511681  T

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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 216 - 327
Target Start/End: Complemental strand, 19602710 - 19602599
Alignment:
Q  216 acatagatttccccgcaattcgcccttgcaaattacgaaggtcccaaaaaatgagttacaaccctaaattcatatttggattcaattatatttgaaacta 315  Q
    |||||| ||||||||||||||||||||||||||||||| |||||| ||  |||||||| | || || ||||||| || |||||||||||||| |||| ||    
T  19602710 acatagctttccccgcaattcgcccttgcaaattacgagggtccctaagcatgagttatagccttacattcatacttagattcaattatattagaaatta 19602611  T
Q  316 accaattcacta 327  Q
    ||||||||||||    
T  19602610 accaattcacta 19602599  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 29438308 - 29438247
Alignment:
Q  266 atgagttacaaccctaaattcatatttggattcaattatatttgaaactaaccaattcacta 327  Q
    |||||||| ||||||||||||||||||  |||| |||||||| |||||||| ||||||||||    
T  29438308 atgagttataaccctaaattcatatttaaattcgattatattagaaactaagcaattcacta 29438247  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 19649190 - 19649229
Alignment:
Q  21 caatcaatcgagtcatacaccttttcaaaatcaactttaa 60  Q
    |||||||||||||||||| ||||||||||||| |||||||    
T  19649190 caatcaatcgagtcatacgccttttcaaaatccactttaa 19649229  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 1002103 - 1002054
Alignment:
Q  280 taaattcatatttggattcaattatatttgaaactaaccaattcactatt 329  Q
    |||||||||| || | |||||||||||| |||||||| ||||||||||||    
T  1002103 taaattcatacttagtttcaattatattagaaactaagcaattcactatt 1002054  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 307
Target Start/End: Original strand, 21536735 - 21536819
Alignment:
Q  223 tttccccgcaattcgcccttgcaaattacgaaggtcccaaaaaatgagttacaaccctaaattcatatttggattcaattatatt 307  Q
    ||||||| |||||| |||||||||||||| | |||||| ||| |||||||| ||||||||||||||  || ||||||||||||||    
T  21536735 tttccccacaattcacccttgcaaattacaagggtcccgaaagatgagttataaccctaaattcatgcttagattcaattatatt 21536819  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 32851014 - 32850934
Alignment:
Q  40 ccttttcaaaatcaactttaaggatcaagcgttcatgtttcctccttttcgccaaatccatcacctcattaataatcatca 120  Q
    ||||||||||||| |||||||  ||||| ||||||||||||||||| || ||||||||||  |||||||||| ||||||||    
T  32851014 ccttttcaaaatccactttaaaaatcaaacgttcatgtttcctcctcttagccaaatccactacctcattaacaatcatca 32850934  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 329
Target Start/End: Complemental strand, 9801463 - 9801365
Alignment:
Q  231 caattcgcccttgcaaattacgaaggtcccaaaaaatgagttacaaccctaaattcatatttggattcaattatatttgaaactaaccaattcactatt 329  Q
    ||||||| |||| ||||||| || |||||| ||| |||||||| ||||||||||||||| |  ||||||||||||||  |||| || ||||||||||||    
T  9801463 caattcggcctttcaaattaagagggtccctaaagatgagttataaccctaaattcatactaagattcaattatattataaaccaagcaattcactatt 9801365  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 326
Target Start/End: Complemental strand, 9761022 - 9760927
Alignment:
Q  231 caattcgcccttgcaaattacgaaggtcccaaaaaatgagttacaaccctaaattcatatttggattcaattatatttgaaactaaccaattcact 326  Q
    ||||||| |||| |||||||||| |||||| ||| |||||||| | ||||||||||||| |  |||||||||||||| ||||| || ||| |||||    
T  9761022 caattcggcctttcaaattacgagggtccctaaagatgagttatagccctaaattcatactaagattcaattatattagaaaccaagcaagtcact 9760927  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 327
Target Start/End: Original strand, 21544077 - 21544181
Alignment:
Q  223 tttccccgcaattcgcccttgcaaattacgaaggtcccaaaaaatgagttacaaccctaaattcatatttggattcaattatatttgaaactaaccaatt 322  Q
    ||||||| ||||||||||||||||||||| | |||||| ||| |||| ||| | || ||||||||   || ||||||||| ||||  ||||||| |||||    
T  21544077 tttccccacaattcgcccttgcaaattacaagggtcccgaaagatgacttatagccataaattcaaggttagattcaattgtattataaactaagcaatt 21544176  T
Q  323 cacta 327  Q
    |||||    
T  21544177 cacta 21544181  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 9552987 - 9552890
Alignment:
Q  230 gcaattcgcccttgcaaattacgaaggtcccaaaaaatgagttacaaccctaaattcatatttggattcaattatatttgaaactaaccaattcacta 327  Q
    ||||||| |||||| |||||| || | |||| ||| ||||| || |||| |||||||||| |  ||||||||||||||  |||| |||||||||||||    
T  9552987 gcaattctcccttgaaaattatgaggatccctaaagatgaggtataaccttaaattcatactaagattcaattatattataaaccaaccaattcacta 9552890  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 45994071 - 45994110
Alignment:
Q  21 caatcaatcgagtcatacaccttttcaaaatcaactttaa 60  Q
    |||||||||||||||||| ||||||||||||| |||||||    
T  45994071 caatcaatcgagtcatacgccttttcaaaatccactttaa 45994110  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 6230293 - 6230247
Alignment:
Q  84 cttttcgccaaatccatcacctcattaataatcatcaccccatccac 130  Q
    |||||||||||||||| ||||||||| |||| || ||||||||||||    
T  6230293 cttttcgccaaatccaccacctcattgataaccaacaccccatccac 6230247  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 216 - 329
Target Start/End: Original strand, 22488055 - 22488168
Alignment:
Q  216 acatagatttccccgcaattcgcccttgcaaattacgaaggtcccaaaaaatgagttacaaccctaaattcatatttggattcaattatatttgaaacta 315  Q
    |||||| ||||| ||||||||||||||||||||||||| | |||| ||| |||||| | |||  |||||||||| ||  ||| ||||||||  |||||||    
T  22488055 acatagctttcctcgcaattcgcccttgcaaattacgaggatcccgaaagatgagtaataacaataaattcatacttatattaaattatatgagaaacta 22488154  T
Q  316 accaattcactatt 329  Q
    |  |||||||||||    
T  22488155 agtaattcactatt 22488168  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 315
Target Start/End: Original strand, 5631839 - 5631929
Alignment:
Q  225 tccccgcaattcgcccttgcaaattacgaaggtcccaaaaaatgagttacaaccctaaattcatatttggattcaattatatttgaaacta 315  Q
    ||||||||||||  |||| ||||||| || |||||| ||| |||| ||| | |||||||||  || || |||||||||||||| |||||||    
T  5631839 tccccgcaattcctcctttcaaattatgagggtccctaaagatgatttatagccctaaatttctacttcgattcaattatattagaaacta 5631929  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 26298616 - 26298566
Alignment:
Q  266 atgagttacaaccctaaattcatatttggattcaattatatttgaaactaa 316  Q
    |||||||| | ||||||||||||| || |||||||||||||| ||||||||    
T  26298616 atgagttatatccctaaattcatacttagattcaattatattagaaactaa 26298566  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 18068795 - 18068738
Alignment:
Q  75 tgtttcctccttttcgccaaatccatcacctcattaataatcatcaccccatccacta 132  Q
    |||||||||||||| || || |||| ||||||||||||| | || |||||||||||||    
T  18068795 tgtttcctccttttagctaagtccaccacctcattaatacttatgaccccatccacta 18068738  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 330
Target Start/End: Original strand, 28730852 - 28730916
Alignment:
Q  266 atgagttacaaccctaaattcatatttggattcaattatatttgaaactaaccaattcactattt 330  Q
    |||||||  |||| |||||||||| || ||||||||||  || |||||||| |||||||||||||    
T  28730852 atgagttgtaaccttaaattcatacttagattcaattaatttagaaactaaacaattcactattt 28730916  T

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Target: scaffold0011 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 227383 - 227485
Alignment:
Q  225 tccccgcaattcgcccttgcaaattacgaaggtcccaaaaaatgagttacaaccctaaattcatatttggattcaattatatttgaaactaaccaattca 324  Q
    ||||| ||||||| || |||||||| ||| |||| | ||| |||||||| | |||||||||  || || ||||||||||||||| ||||||| |||||||    
T  227383 tccccacaattcgtccgtgcaaattgcgagggtctctaaagatgagttatagccctaaatttgtacttagattcaattatattttaaactaagcaattca 227482  T
Q  325 cta 327  Q
    |||    
T  227483 cta 227485  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 18281440 - 18281501
Alignment:
Q  266 atgagttacaaccctaaattcatatttggattcaattatatttgaaactaaccaattcacta 327  Q
    |||||||| ||||||||||||||| || |||||||||||||| ||||||||  |||||||||    
T  18281440 atgagttataaccctaaattcatacttagattcaattatattagaaactaagaaattcacta 18281501  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 25503638 - 25503599
Alignment:
Q  21 caatcaatcgagtcatacaccttttcaaaatcaactttaa 60  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  25503638 caatcaatcgagtcatacgccttttcaaaatcaactttaa 25503599  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 32776053 - 32776124
Alignment:
Q  40 ccttttcaaaatcaactttaaggatcaagcgttcatgtttcctccttttcgccaaatccatcacctcattaa 111  Q
    |||||||||| |  || ||||||||||||| ||||||||||  ||||||||||||||| | ||| |||||||    
T  32776053 ccttttcaaagttcaccttaaggatcaagcattcatgtttcacccttttcgccaaatcaaccacttcattaa 32776124  T

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Target: scaffold0065 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 316
Target Start/End: Complemental strand, 13204 - 13127
Alignment:
Q  239 ccttgcaaattacgaaggtcccaaaaaatgagttacaaccctaaattcatatttggattcaattatatttgaaactaa 316  Q
    ||||||||||||| | |||||| ||| || ||| | | ||||||||||||| || |||||||||||||| ||||||||    
T  13204 ccttgcaaattacaagggtccctaaagattagtaatatccctaaattcatacttagattcaattatattagaaactaa 13127  T

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