View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1492_low_35 (Length: 312)

Name: NF1492_low_35
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1492_low_35
NF1492_low_35
[»] chr6 (17 HSPs)
chr6 (1-182)||(5578305-5578487)
chr6 (203-297)||(5578545-5578641)
chr6 (1-93)||(10855463-10855555)
chr6 (4-89)||(29692331-29692416)
chr6 (1-59)||(7875201-7875259)
chr6 (1-77)||(6866946-6867022)
chr6 (1-76)||(12191524-12191599)
chr6 (1-59)||(7880447-7880505)
chr6 (1-63)||(12175590-12175652)
chr6 (23-93)||(16437576-16437646)
chr6 (44-93)||(26572068-26572117)
chr6 (1-93)||(7274200-7274292)
chr6 (2-62)||(8324121-8324181)
chr6 (13-93)||(32786259-32786338)
chr6 (1-62)||(27127524-27127585)
chr6 (2-54)||(26539145-26539197)
chr6 (2-63)||(12775142-12775203)
[»] chr7 (31 HSPs)
chr7 (1-93)||(40763280-40763372)
chr7 (1-93)||(5240318-5240410)
chr7 (1-93)||(8380472-8380564)
chr7 (1-93)||(29034718-29034810)
chr7 (1-93)||(43567492-43567584)
chr7 (1-93)||(48454808-48454900)
chr7 (1-93)||(7322939-7323031)
chr7 (1-77)||(22521617-22521693)
chr7 (2-76)||(40066920-40066994)
chr7 (1-93)||(5347958-5348050)
chr7 (1-93)||(24359694-24359786)
chr7 (2-93)||(36279151-36279242)
chr7 (1-102)||(27053469-27053571)
chr7 (1-75)||(46478560-46478633)
chr7 (1-62)||(40774259-40774320)
chr7 (1-93)||(22707080-22707171)
chr7 (1-76)||(8292776-8292851)
chr7 (2-77)||(49069587-49069662)
chr7 (1-75)||(42222252-42222326)
chr7 (4-93)||(8258629-8258713)
chr7 (1-58)||(32204213-32204270)
chr7 (1-89)||(1910275-1910362)
chr7 (1-73)||(3681725-3681797)
chr7 (1-77)||(41188788-41188864)
chr7 (2-89)||(30538470-30538557)
chr7 (2-62)||(31626058-31626118)
chr7 (1-93)||(43958069-43958161)
chr7 (1-62)||(3720131-3720192)
chr7 (1-64)||(40194857-40194920)
chr7 (1-42)||(30388697-30388738)
chr7 (1-61)||(46042779-46042838)
[»] chr4 (39 HSPs)
chr4 (1-93)||(27839292-27839384)
chr4 (1-93)||(55669770-55669862)
chr4 (1-93)||(35808382-35808474)
chr4 (1-93)||(31754969-31755061)
chr4 (1-93)||(34016656-34016748)
chr4 (1-93)||(41956199-41956291)
chr4 (1-93)||(45688774-45688866)
chr4 (1-93)||(26040346-26040438)
chr4 (1-93)||(51266955-51267047)
chr4 (2-93)||(23765610-23765701)
chr4 (3-93)||(30475458-30475548)
chr4 (5-93)||(19876169-19876257)
chr4 (1-93)||(32131173-32131265)
chr4 (13-93)||(51290473-51290553)
chr4 (6-93)||(2362667-2362754)
chr4 (1-91)||(34316710-34316801)
chr4 (3-93)||(31487754-31487844)
chr4 (1-93)||(50514600-50514691)
chr4 (1-93)||(54339144-54339235)
chr4 (1-66)||(20811294-20811359)
chr4 (2-66)||(33951732-33951796)
chr4 (3-75)||(40436114-40436186)
chr4 (1-57)||(19328950-19329006)
chr4 (1-93)||(31168165-31168257)
chr4 (2-93)||(26831772-26831863)
chr4 (1-63)||(3769844-3769906)
chr4 (15-93)||(46695948-46696026)
chr4 (1-62)||(1457552-1457613)
chr4 (6-63)||(27545899-27545955)
chr4 (2-62)||(51018396-51018456)
chr4 (33-93)||(53566936-53566996)
chr4 (1-88)||(10100104-10100191)
chr4 (1-63)||(30199802-30199864)
chr4 (1-51)||(45088098-45088148)
chr4 (48-93)||(16559980-16560025)
chr4 (1-86)||(30617980-30618065)
chr4 (1-86)||(35675183-35675268)
chr4 (1-62)||(48513650-48513711)
chr4 (1-74)||(52341632-52341705)
[»] chr5 (27 HSPs)
chr5 (2-94)||(39567935-39568027)
chr5 (1-82)||(1479133-1479214)
chr5 (1-93)||(5151520-5151612)
chr5 (6-93)||(35653241-35653328)
chr5 (1-87)||(25017283-25017369)
chr5 (5-93)||(4421950-4422038)
chr5 (9-93)||(15915871-15915955)
chr5 (2-93)||(25568277-25568369)
chr5 (1-108)||(34546809-34546917)
chr5 (2-93)||(338750-338841)
chr5 (2-76)||(27823291-27823365)
chr5 (1-82)||(1759848-1759929)
chr5 (1-75)||(12068178-12068252)
chr5 (2-88)||(43414055-43414141)
chr5 (1-90)||(4962506-4962594)
chr5 (1-93)||(3639061-3639153)
chr5 (2-93)||(28143109-28143200)
chr5 (2-89)||(37243879-37243965)
chr5 (4-93)||(16315520-16315607)
chr5 (3-89)||(35945279-35945365)
chr5 (2-93)||(40099364-40099454)
chr5 (1-93)||(8410173-8410265)
chr5 (2-56)||(12914207-12914261)
chr5 (1-57)||(13951258-13951314)
chr5 (1-62)||(38610309-38610370)
chr5 (1-93)||(10017608-10017697)
chr5 (2-62)||(17168708-17168768)
[»] chr1 (34 HSPs)
chr1 (1-93)||(34874598-34874690)
chr1 (1-93)||(47655354-47655446)
chr1 (1-93)||(49508717-49508808)
chr1 (2-93)||(40845283-40845374)
chr1 (1-93)||(2125690-2125782)
chr1 (1-93)||(7190458-7190550)
chr1 (1-93)||(27209704-27209796)
chr1 (1-93)||(41147461-41147553)
chr1 (1-93)||(42607307-42607399)
chr1 (1-93)||(22346220-22346312)
chr1 (2-93)||(43433807-43433898)
chr1 (1-91)||(11385795-11385885)
chr1 (1-79)||(52396474-52396551)
chr1 (1-82)||(932151-932232)
chr1 (1-93)||(28850893-28850985)
chr1 (1-93)||(33929997-33930089)
chr1 (1-76)||(4940740-4940815)
chr1 (2-93)||(31975519-31975610)
chr1 (1-74)||(26469584-26469657)
chr1 (2-74)||(28277484-28277556)
chr1 (1-103)||(32213861-32213964)
chr1 (1-63)||(11386012-11386074)
chr1 (1-77)||(50295432-50295508)
chr1 (6-93)||(29966859-29966946)
chr1 (3-74)||(49901959-49902030)
chr1 (1-87)||(6170540-6170626)
chr1 (1-62)||(50154504-50154565)
chr1 (1-93)||(5945451-5945543)
chr1 (6-90)||(8244128-8244208)
chr1 (2-93)||(45721784-45721874)
chr1 (1-93)||(24140804-24140895)
chr1 (2-75)||(4656048-4656121)
chr1 (1-77)||(17402979-17403055)
chr1 (1-57)||(41898878-41898934)
[»] chr8 (23 HSPs)
chr8 (1-93)||(19389296-19389388)
chr8 (2-93)||(45338036-45338127)
chr8 (1-93)||(5129442-5129534)
chr8 (1-93)||(21016043-21016135)
chr8 (2-102)||(35930168-35930269)
chr8 (1-93)||(21016265-21016357)
chr8 (3-89)||(4989966-4990052)
chr8 (1-93)||(6939189-6939281)
chr8 (1-81)||(44874356-44874436)
chr8 (3-66)||(18068995-18069058)
chr8 (3-74)||(37433298-37433369)
chr8 (1-75)||(25249345-25249419)
chr8 (2-75)||(8018793-8018866)
chr8 (1-93)||(26672821-26672912)
chr8 (1-66)||(26195386-26195451)
chr8 (1-74)||(10694838-10694911)
chr8 (1-73)||(3174491-3174563)
chr8 (1-61)||(6433575-6433635)
chr8 (1-63)||(26892817-26892879)
chr8 (1-66)||(14855397-14855462)
chr8 (1-77)||(7532816-7532892)
chr8 (30-93)||(33741472-33741533)
chr8 (56-93)||(18808953-18808990)
[»] chr3 (30 HSPs)
chr3 (1-89)||(32415600-32415688)
chr3 (1-93)||(35306363-35306455)
chr3 (1-93)||(36730139-36730231)
chr3 (1-93)||(46317517-46317609)
chr3 (1-93)||(4759836-4759928)
chr3 (1-93)||(8715488-8715579)
chr3 (1-93)||(9067375-9067466)
chr3 (1-93)||(29915561-29915653)
chr3 (1-93)||(29964714-29964806)
chr3 (1-93)||(37509142-37509234)
chr3 (1-93)||(44570372-44570464)
chr3 (1-89)||(1803919-1804007)
chr3 (1-89)||(8847442-8847530)
chr3 (1-77)||(51817314-51817390)
chr3 (1-89)||(10854890-10854982)
chr3 (1-54)||(20227405-20227458)
chr3 (2-74)||(12051070-12051142)
chr3 (15-93)||(25102308-25102386)
chr3 (11-93)||(48136709-48136790)
chr3 (1-66)||(12905296-12905360)
chr3 (44-93)||(41346348-41346397)
chr3 (2-75)||(44695675-44695748)
chr3 (30-93)||(31647354-31647417)
chr3 (1-60)||(52570813-52570872)
chr3 (1-59)||(39974826-39974884)
chr3 (2-86)||(18780-18864)
chr3 (5-88)||(13647027-13647110)
chr3 (1-59)||(34060786-34060844)
chr3 (1-63)||(39436496-39436558)
chr3 (1-58)||(21324547-21324603)
[»] chr2 (33 HSPs)
chr2 (1-93)||(765136-765228)
chr2 (1-89)||(17603842-17603930)
chr2 (1-93)||(39401521-39401612)
chr2 (1-93)||(39085778-39085870)
chr2 (2-93)||(13997890-13997981)
chr2 (1-88)||(33726411-33726498)
chr2 (1-93)||(16361597-16361689)
chr2 (2-62)||(44173151-44173211)
chr2 (6-93)||(35445276-35445363)
chr2 (2-93)||(43140309-43140400)
chr2 (1-75)||(2966571-2966645)
chr2 (4-93)||(862623-862712)
chr2 (1-66)||(41436509-41436574)
chr2 (1-77)||(6999233-6999309)
chr2 (1-93)||(17056044-17056135)
chr2 (1-93)||(17068491-17068582)
chr2 (1-93)||(17074474-17074565)
chr2 (1-93)||(33864386-33864478)
chr2 (2-93)||(27495155-27495246)
chr2 (1-89)||(9201485-9201573)
chr2 (1-77)||(44299683-44299759)
chr2 (2-93)||(1321200-1321291)
chr2 (2-75)||(17118377-17118450)
chr2 (1-77)||(17095069-17095144)
chr2 (6-57)||(11445313-11445364)
chr2 (1-64)||(464826-464890)
chr2 (1-61)||(30831649-30831709)
chr2 (1-63)||(2239613-2239675)
chr2 (1-63)||(8327011-8327073)
chr2 (1-63)||(10900266-10900328)
chr2 (3-61)||(37230253-37230311)
chr2 (53-93)||(23685649-23685689)
chr2 (1-37)||(31167625-31167661)
[»] scaffold0062 (3 HSPs)
scaffold0062 (1-93)||(16758-16849)
scaffold0062 (1-93)||(26926-27017)
scaffold0062 (1-93)||(37092-37183)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-94)||(392113-392210)
[»] scaffold0809 (1 HSPs)
scaffold0809 (12-64)||(4285-4337)


Alignment Details
Target: chr6 (Bit Score: 163; Significance: 5e-87; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 5578305 - 5578487
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggttat-attct 99  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  5578305 cttttaaaaagttaaatttatcaattctcattatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatagttatcattct 5578404  T
Q  100 ccttgaaaatatggtttttaaaaatcttgaatttgattatgtttttagtctatgtcaatatataaatatagcaaacttgacta 182  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5578405 ccttgaaaatatggtttttaaaaattttgaatttgattatgtttttagtctatgtcaatatataaatatagcaaacttgacta 5578487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 203 - 297
Target Start/End: Original strand, 5578545 - 5578641
Alignment:
Q  203 cttatgagtgattttgtttaaaaatgttgtg--accaattttcatgacatagtctgaagttcaaataatgttggcatgaactaaagttgcttgctat 297  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5578545 cttatgagtgattttgtttaaaaatgttgtgtgaccaattttcatgacatagtctgaagttcaaataatgttggcatggactaaagttgcttgctat 5578641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 10855463 - 10855555
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || |||||||||||||||  |||||||||||||||||||||| ||| |||||| ||||| |||||||||    
T  10855463 cttttaaaaagttaaatttatcacttttcatcatttttcaatattatatttctatttttatccccttatcaaatgccccaaggacaatggtta 10855555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 29692416 - 29692331
Alignment:
Q  4 ttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatg 89  Q
    |||||||||||||||||||| || ||| ||||||||||| ||||||||||||||||||||  | |||||||||| |||||||||||    
T  29692416 ttaaaaagttaaatttatcacttttcaccatttttcaatactatatttctatttttatccatttatccaatgccccaagggcaatg 29692331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 7875259 - 7875201
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctattttt 59  Q
    ||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||    
T  7875259 cttttaaaaagttaaatttatcacttttcatcattttccaatgctatatttctattttt 7875201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 6866946 - 6867022
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcc 77  Q
    ||||||||| ||||||||||||| || ||| ||||||  |||||||||||| |||||||||||||| ||||||||||    
T  6866946 cttttaaaaggttaaatttatcacttttcaccattttcaaatgctatatttttatttttatccccttatccaatgcc 6867022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 12191524 - 12191599
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgc 76  Q
    |||||||||| |||||||||||| || ||| |||||  ||||||||||||||||||||||||| || |||||||||    
T  12191524 cttttaaaaaattaaatttatcacttttcaccatttaccaatgctatatttctatttttatccacttatccaatgc 12191599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 7880505 - 7880447
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctattttt 59  Q
    ||||||||||||||||||||||| || ||||||||||  ||||||||||||||||||||    
T  7880505 cttttaaaaagttaaatttatcacttttcatcattttctaatgctatatttctattttt 7880447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 12175590 - 12175652
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcc 63  Q
    ||||||||||||||||||||||| || | ||||||||||||| |||||||| |||||||||||    
T  12175590 cttttaaaaagttaaatttatcagtttttatcatttttcaatactatatttatatttttatcc 12175652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 16437646 - 16437576
Alignment:
Q  23 aattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||| ||| |||||| ||||| ||||||||||||||||||| || ||||||||||| ||| ||||||||||    
T  16437646 aattttcaccattttccaatgttatatttctatttttatccacttatccaatgccttaagagcaatggtta 16437576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 26572117 - 26572068
Alignment:
Q  44 ctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| |||||||||| ||||| |||||||||    
T  26572117 ctatatttctatttttatccccttatccaatgccccaaggacaatggtta 26572068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 7274292 - 7274200
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||| ||||||||||||| || || ||||||| ||||| ||||||||||| ||||| ||||  ||||||| | ||| | |||||||||    
T  7274292 cttttaaaatgttaaatttatcacttttcgtcattttccaatgttatatttctatatttattcccttgtccaatgtcccaaagacaatggtta 7274200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 8324181 - 8324121
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatc 62  Q
    |||||||||||||||||||||| || |||  |||| |||||||||| ||||||||||||||    
T  8324181 ttttaaaaagttaaatttatcatttttcacaatttctcaatgctatgtttctatttttatc 8324121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 32786259 - 32786338
Alignment:
Q  13 taaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||  || ||| |||||| ||||| ||||||||||||||||| |||| ||||||| || |||||||||||||||    
T  32786259 taaatttatctcttttcaccattttccaatgttatatttctatttttat-cccttatccaataccccaagggcaatggtta 32786338  T

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Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 27127585 - 27127524
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatc 62  Q
    |||||||||||||||||| |||| || ||| ||||| ||||| | |||||||||||||||||    
T  27127585 cttttaaaaagttaaattcatcatttttcaccatttctcaatacaatatttctatttttatc 27127524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 26539145 - 26539197
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttcta 54  Q
    ||||||||||| |||| |||||||| ||||||||||||||| | |||||||||    
T  26539145 ttttaaaaagtcaaatctatcaattttcatcatttttcaatacaatatttcta 26539197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 12775142 - 12775203
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcc 63  Q
    ||||||||||||||||| |||| || |||||| |||| ||| | |||||| |||||||||||    
T  12775142 ttttaaaaagttaaattaatcatttttcatcagtttttaatacaatatttatatttttatcc 12775203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 40763280 - 40763372
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || ||| |||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  40763280 cttttaaaaagttaaatttatcacttttcaccatttttcaatgttatatttctatttttatccccttatccaatgccccaagggcaatggtta 40763372  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 5240410 - 5240318
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || ||| ||||||||||| ||||||||||||||||||||| | |||||||||||||||| |||||||||    
T  5240410 cttttaaaaagttaaatttatcacttttcaccatttttcaatactatatttctatttttatccctttatccaatgcctcaaggacaatggtta 5240318  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 8380472 - 8380564
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || |||||||||| ||||||||||||| |||||||||||||| ||||||| || ||||||| |||||||    
T  8380472 cttttaaaaagttaaatttatcacttttcatcattttccaatgctatatttttatttttatccccttatccaataccccaagggccatggtta 8380564  T

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Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 29034718 - 29034810
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || ||| |||||| |||| |||||||| |||||||||||||| |||||||||||||||| |||||||||    
T  29034718 cttttaaaaagttaaatttatcacttttcaccattttccaatactatatttatatttttatccccttatccaatgcctcaaggacaatggtta 29034810  T

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Target: chr7; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 43567584 - 43567492
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || ||| |||||| |||| ||||| ||||||||||||| ||| |||||||||| |||||||||||||||    
T  43567584 cttttaaaaagttaaatttatcacttttcaccattttccaatactataattctatttttatctccttatccaatgccccaagggcaatggtta 43567492  T

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Target: chr7; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 48454900 - 48454808
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || ||| |||||  ||||| |||||||||||||||||||||| |||||||||| |||||| ||||||||    
T  48454900 cttttaaaaagttaaatttatcacttttcaccatttcccaatgttatatttctatttttatccccttatccaatgccccaagggtaatggtta 48454808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 7323031 - 7322939
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||| |||||||||||| || ||| |||||||||| | ||||||||||||||||||| || |||||||  |||||||||||||||||    
T  7323031 cttttaaaaaattaaatttatcacttttcaccatttttcaaggttatatttctatttttatcctcttatccaatatctcaagggcaatggtta 7322939  T

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Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 22521617 - 22521693
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcc 77  Q
    ||||||| ||||||||||||||| ||||||||||||| |||||||||||||||| |||||||| || ||||||||||    
T  22521617 cttttaagaagttaaatttatcacttctcatcattttccaatgctatatttctagttttatcctcttatccaatgcc 22521693  T

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Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 40066994 - 40066920
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgc 76  Q
    |||||||||||||||||||||| || ||| |||||||||||  |||||||||||||||||||||| |||||||||    
T  40066994 ttttaaaaagttaaatttatcatttttcaccatttttcaatattatatttctatttttatccccttatccaatgc 40066920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 5348050 - 5347958
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || |||||||||| ||||| ||||||||||||| ||| |||| || |||||||  ||||| ||||||||    
T  5348050 cttttaaaaagttaaatttatcacttttcatcattttccaatgttatatttctatttatattcccttattcaatgccctaagggtaatggtta 5347958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 24359786 - 24359694
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||  || | | |||||| || ||||||||||||||||||||||||| ||||||| ||  ||||||||||||||    
T  24359786 cttttaaaaagttaaatttatccctttttaccattttccattgctatatttctatttttatccccttatccaatacccgaagggcaatggtta 24359694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 36279151 - 36279242
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||||||||||| || ||| |||||| ||||||||||||| |||||||||||  | |||||||||| |||| | ||||||||    
T  36279151 ttttaaaaagttaaatttatcacttttcaccattttccaatgctatatttatatttttatcctattatccaatgccccaagagtaatggtta 36279242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 27053571 - 27053469
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta-tattct 99  Q
    ||||||||||||||||||||||| || ||| ||||||   |||||||||||||||||||||||| | ||||||||||  |||| ||||| ||| ||||||    
T  27053571 cttttaaaaagttaaatttatcacttttcaccattttctgatgctatatttctatttttatccctttatccaatgccctaaggacaatgattagtattct 27053472  T
Q  100 cct 102  Q
    |||    
T  27053471 cct 27053469  T

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Target: chr7; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 46478633 - 46478560
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatg 75  Q
    ||||||||||||||||||||||| || |||  ||||||||||| |||||||||||||||||||||| ||||||||    
T  46478633 cttttaaaaagttaaatttatcattt-tcactatttttcaatgatatatttctatttttatccccttatccaatg 46478560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 40774320 - 40774259
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatc 62  Q
    |||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||| ||||    
T  40774320 cttttaaaaagttaaattcatcaattttcatcatttttcaatgcaatatttctatttgtatc 40774259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 22707080 - 22707171
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||| |||||||||| || |||| ||||| ||||||||||||||||||||||| || | || ||||||| ||| |||||||||||    
T  22707080 cttttaaaaagtaaaatttatcatttttcattattttccaatgctatatttctatttttat-cctttattcaatgccccaaaggcaatggtta 22707171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 8292776 - 8292851
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgc 76  Q
    |||||||||||  |||||||| | || ||| |||||| |||||||||||||||||||||||||||| |||||||||    
T  8292776 cttttaaaaaggcaaatttataacttttcaccattttccaatgctatatttctatttttatccccttatccaatgc 8292851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 49069587 - 49069662
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcc 77  Q
    ||||||||||||| |||||||| || ||| ||||||||||| |||||||||||||||||||  || ||||||||||    
T  49069587 ttttaaaaagttagatttatcacttttcaccatttttcaatactatatttctatttttatcttcttatccaatgcc 49069662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 42222252 - 42222326
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatg 75  Q
    ||||||||||||||||||||||| || ||| |||||| |||| | ||||||||||||||||||||| ||| ||||    
T  42222252 cttttaaaaagttaaatttatcacttttcaccattttccaataccatatttctatttttatccccttatctaatg 42222326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 8258713 - 8258629
Alignment:
Q  4 ttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||||||||| || ||| |||||||||||     ||||||||||||||||||| |||| ||||| |||||||||| ||||    
T  8258713 ttaaaaagttaaatttatcacttttcaccatttttcaat-----atttctatttttatccccttatccgatgccccaagggcaatagtta 8258629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 32204213 - 32204270
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttt 58  Q
    |||||||||||||||||| |||| || ||||||||||||||||| |||||||||||||    
T  32204213 cttttaaaaagttaaattcatcacttttcatcatttttcaatgcaatatttctatttt 32204270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 1910275 - 1910362
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatg 89  Q
    ||||||||||||||||||||||| || ||| ||||||  |||| ||||||||||||||||| |||| ||| ||||||  ||||||||||    
T  1910275 cttttaaaaagttaaatttatcatttttcaccattttctaatgttatatttctatttttat-cccttatcaaatgccctaagggcaatg 1910362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 3681725 - 3681797
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaa 73  Q
    ||||||||||||||||||||||| || ||| |||||| ||||| | ||||| |||||||||||||| ||||||    
T  3681725 cttttaaaaagttaaatttatcacttttcaccattttccaatgttgtatttttatttttatccccttatccaa 3681797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 41188864 - 41188788
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcc 77  Q
    |||||||||||||||||||||||  | ||| |||||| ||||||||||||| ||||||||||| || ||| ||||||    
T  41188864 cttttaaaaagttaaatttatcacctttcaccattttccaatgctatatttatatttttatcctcttatcaaatgcc 41188788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 30538557 - 30538470
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatg 89  Q
    |||||||||||||||||||||| || |||  |||||  ||| ||||||||||||||||||||||| ||| |||| | ||||| |||||    
T  30538557 ttttaaaaagttaaatttatcatttttcactattttctaatactatatttctatttttatccccttatctaatgtcccaaggacaatg 30538470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 31626118 - 31626058
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatc 62  Q
    |||||||||||||||||||||| || ||||||||||| |||  ||||||| ||||||||||    
T  31626118 ttttaaaaagttaaatttatcacttttcatcattttttaatattatatttttatttttatc 31626058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 43958161 - 43958069
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||| |||||||||||| || |||  |||||  ||| ||||||||||||||||||| ||| ||||||||    ||||||||||||||    
T  43958161 cttttaaaaaattaaatttatcatttttcacaattttctaatactatatttctatttttatcgccttatccaatggtctaagggcaatggtta 43958069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 3720192 - 3720131
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatc 62  Q
    ||||||||||||||||||||||| ||  || ||||| ||||||| ||||| |||||||||||    
T  3720192 cttttaaaaagttaaatttatcattttacaccatttgtcaatgcaatattactatttttatc 3720131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 40194857 - 40194920
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatccc 64  Q
    |||||||||| |||||||||||| || |||||| |||  ||| |||||||| ||||||||||||    
T  40194857 cttttaaaaaattaaatttatcacttttcatcaatttataatactatatttatatttttatccc 40194920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30388738 - 30388697
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaat 42  Q
    ||||||||||||||||||||||| || ||| |||||||||||    
T  30388738 cttttaaaaagttaaatttatcatttttcaccatttttcaat 30388697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 46042779 - 46042838
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttat 61  Q
    |||| |||||||||||||||| | || ||| |||||| |||| ||||||||||||||||||    
T  46042779 ctttaaaaaagttaaatttataacttttcaccatttt-caatactatatttctatttttat 46042838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 27839384 - 27839292
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||    
T  27839384 cttttaaaaacttaaatttatcatttttcatcatttttcaatgctatatttctatttttattcccttatccaatgccccaagggcaatggtta 27839292  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 55669770 - 55669862
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || ||| |||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  55669770 cttttaaaaagttaaatttatcatttttcaccattttccaatgctatatttctatttttatccccttatccaatgccccaagggcaatggtta 55669862  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 35808474 - 35808382
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || |||  ||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  35808474 cttttaaaaagttaaatttatcatttttcacaattttccaatgctatatttctatttttatccccttatccaatgccccaagggcaatggtta 35808382  T

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Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 31754969 - 31755061
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || ||||||||||||||| |||||||| |||||||||||||| ||||||| || ||| |||||||||||    
T  31754969 cttttaaaaagttaaatttatcacttttcatcatttttcaattctatatttatatttttatccccttatccaataccccaatggcaatggtta 31755061  T

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Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 34016656 - 34016748
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||||||| |||| || ||| |||||| |||||||||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  34016656 cttttaaaaagttaaattcatcacttttcaccattttccaatgctatatttctatttttatccccttatccaatgtctcaaggacaatggtta 34016748  T

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Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 41956291 - 41956199
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || |||||||||| ||||| ||||||||||||||||||| || |||| ||||| |||||||||||||||    
T  41956291 cttttaaaaagttaaatttatcatttttcatcattttccaatgttatatttctatttttatcctcttatccgatgccccaagggcaatggtta 41956199  T

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Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 45688774 - 45688866
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||| ||||||| || ||||  |||||||||    
T  45688774 cttttaaaaagttaaatttatcacttttcatcatttttcaatgctatgtttctatttttatccccttatccaataccccaagaacaatggtta 45688866  T

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Target: chr4; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 26040438 - 26040346
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||||| |||||| || ||| |||||| |||| ||||||||||||||||||||||| |||||||||| ||||| |||||||||    
T  26040438 cttttaaaaagttaaacttatcacttttcaccattttccaatactatatttctatttttatccccttatccaatgccccaaggacaatggtta 26040346  T

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Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 51266955 - 51267047
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || ||| ||||||||||| ||||||||||||||||||| ||| ||||||||   |||| ||||||||||    
T  51266955 cttttaaaaagttaaatttatcacttttcaccatttttcaatactatatttctatttttatctccttatccaatgttccaagagcaatggtta 51267047  T

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Target: chr4; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 23765610 - 23765701
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||||||||||| || ||| |||||| |||||||||||||| ||||||||||||| ||| |||||  ||| |||||||||||    
T  23765610 ttttaaaaagttaaatttatcacttttcaccattttccaatgctatatttcaatttttatccccttatctaatgcaccaaaggcaatggtta 23765701  T

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Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 30475458 - 30475548
Alignment:
Q  3 tttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||| || ||| ||||||||||| |||||||| |||||||||| ||| ||||||| ||  ||||||||||||||    
T  30475458 tttaaaaagttaaatttatcacttttcaccatttttcaatactatatttttatttttatctccttatccaataccctaagggcaatggtta 30475548  T

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Target: chr4; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 19876257 - 19876169
Alignment:
Q  5 taaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||| || |||  ||||| |||| ||||||||||||||||||||||| ||||||||| ||||||| ||| ||||    
T  19876257 taaaaagttaaatttatcacttttcactattttccaatactatatttctatttttatccccttatccaatgcttcaagggtaattgtta 19876169  T

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Target: chr4; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 32131173 - 32131265
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || ||| |||||| |||| ||||||||||||||||||| | | ||||||||   |||||||||||||||    
T  32131173 cttttaaaaagttaaatttatcacttatcaccattttccaatactatatttctatttttatctctttatccaatgttccaagggcaatggtta 32131265  T

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Target: chr4; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 51290473 - 51290553
Alignment:
Q  13 taaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||| || |||||||||| |||||||||||||||| ||||||||||| |||||||| | ||||| |||||||||    
T  51290473 taaatttatcacttttcatcattttccaatgctatatttctaattttatccccttatccaatgtcccaaggacaatggtta 51290553  T

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Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 2362667 - 2362754
Alignment:
Q  6 aaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||| |||||||||||| || ||| |||||| |||| |||||||| |||||||||||||| |||| ||||| |||||||||||||||    
T  2362667 aaaaaattaaatttatcacttttcaccattttccaatactatatttttatttttatccccttatccgatgccccaagggcaatggtta 2362754  T

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Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 34316801 - 34316710
Alignment:
Q  1 cttttaaaaagttaaattt-atcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggt 91  Q
    ||||||||||||||||||| |||| || |||  ||||||||||| ||||||| |||||||||| ||| |||||||||| |||||||||||||    
T  34316801 cttttaaaaagttaaattttatcacttttcactatttttcaatgttatatttatatttttatctccttatccaatgccccaagggcaatggt 34316710  T

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Target: chr4; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 31487754 - 31487844
Alignment:
Q  3 tttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||| |||||||||| || | |  ||||||||||||||||||| |||||||||||||| || ||||||  |||||||||||||||    
T  31487754 tttaaaaagtcaaatttatcacttttaactatttttcaatgctatatttttatttttatccccttattcaatgctccaagggcaatggtta 31487844  T

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Target: chr4; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 50514691 - 50514600
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || | | |||||||||||| |||||||||| |||||||| || |||||||| | |||| ||||||||||    
T  50514691 cttttaaaaagttaaatttatcactttttaccatttttcaatgttatatttcta-ttttatcctcttatccaatgtcacaagagcaatggtta 50514600  T

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Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 54339144 - 54339235
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||| |||||||||||| || ||| |||||||||||| ||||||| |||||||||||| | |||||||||| ||| | |||||||||    
T  54339144 cttttaaaaaattaaatttatcattt-tcaccatttttcaatgttatatttatatttttatccctttatccaatgccccaacgacaatggtta 54339235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 20811294 - 20811359
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccct 66  Q
    ||||||||||||||||||||||| || ||| || ||| ||||| ||||||||||||||||||||||    
T  20811294 cttttaaaaagttaaatttatcacttttcaccaatttccaatgttatatttctatttttatcccct 20811359  T

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Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 33951732 - 33951796
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccct 66  Q
    |||||||||||||||||||||| || |||  ||||| |||| |||||||||||||||||||||||    
T  33951732 ttttaaaaagttaaatttatcacttttcacaattttccaatactatatttctatttttatcccct 33951796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 40436114 - 40436186
Alignment:
Q  3 tttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatg 75  Q
    ||||||||||||||||||| | || ||||||||||| |||||||| |||  ||||||||||||| ||||||||    
T  40436114 tttaaaaagttaaatttattatttttcatcattttttaatgctattttttcatttttatccccttatccaatg 40436186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 19329006 - 19328950
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctattt 57  Q
    |||||||||||||||||||||||  | ||| |||||| |||||||||||||||||||    
T  19329006 cttttaaaaagttaaatttatcacatttcaccattttccaatgctatatttctattt 19328950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 31168165 - 31168257
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||| ||||| |||||||||||| || ||| |||||| |||||||| | |||||||||||||||||  || |||||  |||||||||| ||||    
T  31168165 ctttaaaaaaattaaatttatcacttttcaccattttccaatgctaaaattctatttttatccccttgtctaatgctccaagggcaatagtta 31168257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 26831863 - 26831772
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||| ||||||||||| || | | |||||| ||||  ||||||||||||||||||| || || ||||||| ||||| |||| ||||    
T  26831863 ttttaaaaagataaatttatcactttttaccattttacaatattatatttctatttttatcctcttattcaatgccccaaggacaattgtta 26831772  T

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Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 3769844 - 3769906
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcc 63  Q
    |||||||||||| |||||||||| || ||| ||||||||||||| |||||||||  |||||||    
T  3769844 cttttaaaaagtcaaatttatcacttttcaccatttttcaatgcaatatttctaaatttatcc 3769906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 46696026 - 46695948
Alignment:
Q  15 aatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||| || ||| ||||||||||| |||||||| ||||||||||| || ||||||| || ||| |||||| ||||    
T  46696026 aatttatcacttttcaccatttttcaatcctatatttttatttttatccacttatccaataccccaaaggcaatagtta 46695948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 1457613 - 1457552
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatc 62  Q
    |||||||||| ||||||||||||||| | || | |||||||||  |||||||||||||||||    
T  1457613 cttttaaaaaattaaatttatcaatttttattacttttcaatgtaatatttctatttttatc 1457552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 27545899 - 27545955
Alignment:
Q  6 aaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcc 63  Q
    ||||||||||||| |||| || | ||||||||||||||| ||||||||||||||||||    
T  27545899 aaaaagttaaattcatcactttt-atcatttttcaatgcaatatttctatttttatcc 27545955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 51018456 - 51018396
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatc 62  Q
    |||||||||||||||||  ||| || ||| ||||||||||||| || ||||||||||||||    
T  51018456 ttttaaaaagttaaattcttcacttttcaccatttttcaatgcaatgtttctatttttatc 51018396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 53566996 - 53566936
Alignment:
Q  33 atttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||||||||||||||||||| | | | |||||||| ||| | |||||||||    
T  53566996 atttttcaatgctatatttctatttttatctctttaaccaatgccccaaagacaatggtta 53566936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 10100191 - 10100104
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaat 88  Q
    ||||||||||||||||||||| | || ||| ||||||  |||  ||||||| |||||||||||||| |||| ||| | ||||| ||||    
T  10100191 cttttaaaaagttaaatttataacttttcaccattttctaatattatatttatatttttatccccttatccgatgtcccaaggacaat 10100104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 30199864 - 30199802
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcc 63  Q
    |||||||||| |||| || |||| || | ||||||||||||||| |||||| |||||||||||    
T  30199864 cttttaaaaaattaatttcatcactttttatcatttttcaatgcaatatttatatttttatcc 30199802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 45088098 - 45088148
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatattt 51  Q
    |||| ||||| |||||||||||| || |||||||||| |||||||||||||    
T  45088098 ctttcaaaaaattaaatttatcacttttcatcattttccaatgctatattt 45088148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 16560025 - 16559980
Alignment:
Q  48 atttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||| || | |||||||||| |||||||||||||||    
T  16560025 atttctatttttattcctttatccaatgccccaagggcaatggtta 16559980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 30617980 - 30618065
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggca 86  Q
    |||||||||||||||||| ||   || |||||||||  |||||| |||||||||| ||||||| || | ||||||||  |||||||    
T  30617980 cttttaaaaagttaaattcattgcttttcatcatttcccaatgcaatatttctatgtttatcctcttaaccaatgccctaagggca 30618065  T

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Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 35675268 - 35675183
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggca 86  Q
    |||||||||||||||||| |||| || |||  ||||  |||| | |||||||||||||||||  || | |||||||| ||||||||    
T  35675268 cttttaaaaagttaaattcatcacttttcactatttcccaatacaatatttctatttttatcgtcttaaccaatgccccaagggca 35675183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 48513650 - 48513711
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatc 62  Q
    ||||||||||||||||| | ||| || ||||||||||||||| | || ||| ||||||||||    
T  48513650 cttttaaaaagttaaatctttcacttttcatcatttttcaatacaatgtttttatttttatc 48513711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 52341632 - 52341705
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaat 74  Q
    |||||||||||||||||| |||| || |||||||||| |||    |||||||||||| ||||| |||| |||||    
T  52341632 cttttaaaaagttaaattcatcatttttcatcattttccaacataatatttctatttgtatcctctcaaccaat 52341705  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 39567935 - 39568027
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggttat 94  Q
    |||||||||||||||||||||| || |||||||||| ||||||||||||| |||||||||||| | |||||||||| ||||||||||||||||    
T  39567935 ttttaaaaagttaaatttatcatttttcatcattttccaatgctatatttatatttttatcccattatccaatgccccaagggcaatggttat 39568027  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 1479214 - 1479133
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaag 82  Q
    ||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||| || ||||||||||||    
T  1479214 cttttaaaaagttaaatttatcacttttcattatttttcaatgctatatttctatttttatccccttattcaatgcctcaag 1479133  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 5151520 - 5151612
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || |||||||||| ||||| |||||||||||||||||||||| ||| |||||||||| | |||||||||    
T  5151520 cttttaaaaagttaaatttatcatttttcatcattttccaatgttatatttctatttttatccccttatcaaatgcctcaatgacaatggtta 5151612  T

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Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 35653328 - 35653241
Alignment:
Q  6 aaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||||||| || ||| |||||| |||||||||||||||||||||||||||| |||||||||  |||||||||||||||    
T  35653328 aaaaagttaaatttatcacttttcaccattttccaatgctatatttctatttttatccccttatccaatgcaccaagggcaatggtta 35653241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 25017369 - 25017283
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaa 87  Q
    ||||||||||||||||||||||| || |||  ||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  25017369 cttttaaaaagttaaatttatcacttttcacaattttccaatactatatttctatttttatccccttatccaatgcctcaagggcaa 25017283  T

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Target: chr5; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 4422038 - 4421950
Alignment:
Q  5 taaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||| || ||| |||||| ||||||||||||||||||||||||| || ||||||||||  ||||||||||||||    
T  4422038 taaaaagttaaatttatcacttttcaccattttccaatgctatatttctatttttatcctcttatccaatgccctaagggcaatggtta 4421950  T

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Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 15915871 - 15915955
Alignment:
Q  9 aagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||| || ||| |||||| ||||||||||||||||||||||| |||| |||||||||| |||| ||||||||||    
T  15915871 aagttaaatttatcacttttcaccattttccaatgctatatttctatttttattcccttatccaatgccccaagtgcaatggtta 15915955  T

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Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 25568369 - 25568277
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccc-tcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||||| ||||| || |||||||||||||||||||||||| ||||||||||||| | ||||||| ||||||| ||||| ||||    
T  25568369 ttttaaaaagttaaatgtatcacttttcatcatttttcaatgctatatttatatttttatcccctttatccaatacctcaagagcaatagtta 25568277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 34546809 - 34546917
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggttat-attct 99  Q
    |||||||||| |||||||||||| || ||| |||||||||||| |||||||||||||||||||||| ||||||| |  ||||| ||||| |||| |||||    
T  34546809 cttttaaaaaattaaatttatcacttttcaccatttttcaatgttatatttctatttttatccccttatccaatactccaaggacaatgattatcattct 34546908  T
Q  100 ccttgaaaa 108  Q
    |||| ||||    
T  34546909 ccttaaaaa 34546917  T

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Target: chr5; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 338841 - 338750
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||||||||||| || | |||||||||||||   |||||| |||||||||||| | |||||||||| |||||||||||||||    
T  338841 ttttaaaaagttaaatttatcactttttatcatttttcaatatcatatttttatttttatccctttatccaatgccccaagggcaatggtta 338750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 27823291 - 27823365
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgc 76  Q
    |||||||||||||||||||||| || ||| |||||| |||| ||||||||||||||||||||||| |||||||||    
T  27823291 ttttaaaaagttaaatttatcacttttcaccattttccaatactatatttctatttttatccccttatccaatgc 27823365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 1759848 - 1759929
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaag 82  Q
    ||||||||||||||||||||||| || ||  ||||||||||| |||||||||||||||||||| || |||||||||| ||||    
T  1759848 cttttaaaaagttaaatttatcacttttctccatttttcaatactatatttctatttttatcctcttatccaatgccccaag 1759929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 12068252 - 12068178
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatg 75  Q
    ||||||||||||||||||||||| || ||| |||||| |||| ||||||||||||||||||  ||||||||||||    
T  12068252 cttttaaaaagttaaatttatcacttttcaccattttccaatactatatttctatttttatatcctcatccaatg 12068178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 43414141 - 43414055
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaat 88  Q
    ||||||||||||||||| |||| || ||| |||||| |||||||||||||||||||||||||||| ||||  || | ||||||||||    
T  43414141 ttttaaaaagttaaattgatcatttttcaccattttccaatgctatatttctatttttatccccttatcccttgtcccaagggcaat 43414055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 4962594 - 4962506
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatgg 90  Q
    |||| |||||||||||||||||| || |||||||||| ||||| |||||||||||||||||  ||| |||||||| | ||||||||||||    
T  4962594 ctttaaaaaagttaaatttatcacttttcatcattttccaatgttatatttctatttttat-tccttatccaatgtcccaagggcaatgg 4962506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 3639153 - 3639061
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||| |||||||||||| |  ||| |||||| ||||| |||||||||||||||||||||| || ||||| ||||||  |||||||||    
T  3639153 cttttaaaaaattaaatttatcactcttcaccattttccaatgttatatttctatttttatccccttattcaatgtctcaagaacaatggtta 3639061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 28143200 - 28143109
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||||||||| | || ||| |||||  ||||| |||||||||||||||||| ||| || ||||| | |||||||||||||||    
T  28143200 ttttaaaaagttaaatttattatttttcaccatttcccaatgttatatttctatttttatctccttattcaatgtcccaagggcaatggtta 28143109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 37243879 - 37243965
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatg 89  Q
    |||||||||||||||||||||| || ||| |||||| ||||  ||||||| ||||||||| || | ||||||||||||||||||||||    
T  37243879 ttttaaaaagttaaatttatcacttttcaccattttccaatattatatttttatttttat-cctttatccaatgcctcaagggcaatg 37243965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 16315607 - 16315520
Alignment:
Q  4 ttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||  ||||||| || ||| |||||| |||||||||||||||||||||||||||| |||| |||||  ||||||| ||||||    
T  16315607 ttaaaaagtta--tttatcacttttcaccattttccaatgctatatttctatttttatccccttatccgatgcccaaagggcagtggtta 16315520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 35945279 - 35945365
Alignment:
Q  3 tttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatg 89  Q
    ||||||||||||||||||||| || |||  ||||| ||||| ||||||||||||||||| |||| ||||||| || |||| ||||||    
T  35945279 tttaaaaagttaaatttatcacttttcactattttccaatgttatatttctatttttattcccttatccaataccccaagagcaatg 35945365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 40099364 - 40099454
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttt-tcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||| ||||||||||||| || ||| |||||| |||||||||||||| ||||||  |||||| |||||||||| ||||| |||||||||    
T  40099364 ttttaaaaggttaaatttatcacttttcaccattttttcaatgctatatttttatttt--tccccttatccaatgccacaaggacaatggtta 40099454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 8410173 - 8410265
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || | | ||||||  ||| |||||||| |||||||||||||| ||| ||| || ||| |||||||||||    
T  8410173 cttttaaaaagttaaatttatcattttttaccattttctaatactatatttttatttttatccccttatctaataccccaaaggcaatggtta 8410265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 12914207 - 12914261
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatt 56  Q
    ||||||||| |||||||||||| || ||| |||||||||||||||||||||||||    
T  12914207 ttttaaaaaattaaatttatcacttttcaccatttttcaatgctatatttctatt 12914261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 13951314 - 13951258
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctattt 57  Q
    ||||||||||  ||||||||||| || ||| ||||||||||||||||||||||||||    
T  13951314 cttttaaaaaaataaatttatcacttttcaccatttttcaatgctatatttctattt 13951258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 38610370 - 38610309
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatc 62  Q
    ||||||||||||||||||  ||| || | ||||||||||||||| || ||||||||||||||    
T  38610370 cttttaaaaagttaaattcttcactttttatcatttttcaatgcaatgtttctatttttatc 38610309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 10017697 - 10017608
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||  |||||||||| ||| |||||  || | |||||||||||||||||||| || ||| |||| ||| ||| |||||||||    
T  10017697 cttttaaaaagtta--tttatcaattttcaccatttc-cagtactatatttctatttttatcctcttatcaaatgtctctaggacaatggtta 10017608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 17168708 - 17168768
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatc 62  Q
    ||||||||||| ||||| |||| || ||| | ||||||||||| |||||||||||| ||||    
T  17168708 ttttaaaaagtcaaattcatcatttttcaccgtttttcaatgcaatatttctatttgtatc 17168768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 34874598 - 34874690
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||| |||||||||||| || ||| |||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  34874598 cttttaaaaaattaaatttatcacttttcaccattttccaatgctatatttctatttttatccccttatccaatgccccaagggcaatggtta 34874690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 47655446 - 47655354
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| || ||||| || ||||||||||||||    
T  47655446 cttttaaaaagttaaatttatcaattttcaccatttttcaatgctatacttctatttttatccccttattcaatgtcttaagggcaatggtta 47655354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 49508808 - 49508717
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || ||| |||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  49508808 cttttaaaaagttaaatttatcactt-tcaccattttccaatgctatatttctatttttatccccttatccaatgccccaagggcaatggtta 49508717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 40845283 - 40845374
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||||||||||| || ||| ||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||||||    
T  40845283 ttttaaaaagttaaatttatcacttttcaccatttttcaatactatatttctatttttatccccttattcaatgtctcaagggcaatggtta 40845374  T

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Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 2125782 - 2125690
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || |||  |||||||||||||||||||||||||||||||||| |||||||||| ||||  |||||||||    
T  2125782 cttttaaaaagttaaatttatcacttttcacaatttttcaatgctatatttctatttttatccccttatccaatgccccaagaacaatggtta 2125690  T

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Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 7190550 - 7190458
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||| || | |||||||| ||||||||| |||||    
T  7190550 cttttaaaaagttaaatttatcacttttcatcatttttgaatgctatatttctatttttatcctcttaaccaatgccccaagggcaaaggtta 7190458  T

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Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 27209796 - 27209704
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||||||||||||||| ||| |||||| ||||| |||||||||||||||||||| | |||||||||| ||||| |||||||||    
T  27209796 cttttaaaaagttaaatttatcaattttcaccattttccaatgttatatttctatttttatccctttatccaatgccccaaggacaatggtta 27209704  T

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Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 41147553 - 41147461
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||||||| |||| || | | ||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||    
T  41147553 cttttaaaaagttaaattaatcattttttaccatttttcaatgctatatttctatttttatccccttatccaatgccccaaggacaatggtta 41147461  T

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Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 42607399 - 42607307
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || ||| |||||||||||||||||||| |||||||||||||| ||||||| ||  ||||||||||||||    
T  42607399 cttttaaaaagttaaatttatcatttttcaccatttttcaatgctatatttttatttttatccccttatccaataccctaagggcaatggtta 42607307  T

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Target: chr1; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 22346312 - 22346220
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||| |||||||||||| || ||| ||||||||||| |||||||||||||||||| |||| |||||| ||| |||||||||||||||    
T  22346312 cttttaaaaaattaaatttatcacttttcaccatttttcaatactatatttctatttttattcccttatccaaagccccaagggcaatggtta 22346220  T

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Target: chr1; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 43433807 - 43433898
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||||||||||| || ||| ||||||| ||| ||||||||||||||||||||||| |||||||||| |||| ||||| ||||    
T  43433807 ttttaaaaagttaaatttatcacttttcaccattttttaatactatatttctatttttatccccttatccaatgccccaagagcaatagtta 43433898  T

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Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 11385885 - 11385795
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggt 91  Q
    ||||||||||||||||||||| | || ||| |||||| |||| ||||||||||||||||||||||| |||||||||  |||||||||||||    
T  11385885 cttttaaaaagttaaatttataacttttcaccattttccaatactatatttctatttttatccccttatccaatgctgcaagggcaatggt 11385795  T

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Target: chr1; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 52396474 - 52396551
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctc 79  Q
    ||||||||||||||||||||||| || | ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  52396474 cttttaaaaagttaaatttatcactttt-atcatttttcaatactatatttctatttttatccccttatccaatgcctc 52396551  T

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Target: chr1; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 932232 - 932151
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaag 82  Q
    |||||||||| |||||||||| | || |||||||||| |||||||||||||||||||||||||||| |||||||||| ||||    
T  932232 cttttaaaaaattaaatttataatttttcatcattttccaatgctatatttctatttttatccccttatccaatgccccaag 932151  T

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Target: chr1; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 28850985 - 28850893
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || ||| |||||| ||||| ||||||||||||||||| | || ||| |||||| |||||||||||||||    
T  28850985 cttttaaaaagttaaatttatcacttttcaccattttccaatgttatatttctatttttattctcttatctaatgccccaagggcaatggtta 28850893  T

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Target: chr1; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 33929997 - 33930089
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || |||  ||||||||||||||||||| |||||||||||||| |||||||  ||||| | |||||||||    
T  33929997 cttttaaaaagttaaatttatcagttttcactatttttcaatgctatatttatatttttatccccttatccaatatctcaaagacaatggtta 33930089  T

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Target: chr1; HSP #17
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 4940815 - 4940740
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgc 76  Q
    ||||||||||||||||||||||| || | | |||||| |||||||||||||||||||||||||||| |||||||||    
T  4940815 cttttaaaaagttaaatttatcacttttaaccattttccaatgctatatttctatttttatccccttatccaatgc 4940740  T

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Target: chr1; HSP #18
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 31975519 - 31975610
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||| || || | |||||||||||||| ||||||||||||| |||| | | ||||||| ||||||||||||||||||    
T  31975519 ttttaaaaagttaaatttaccactttttatcatttttcaatgttatatttctatttatatctctttatccaatacctcaagggcaatggtta 31975610  T

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Target: chr1; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 26469657 - 26469584
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaat 74  Q
    ||||||||||||||||||||||| || |||| ||||||||||||||||||| |||||||||||| | |||||||    
T  26469657 cttttaaaaagttaaatttatcatttttcattatttttcaatgctatatttttatttttatccctttatccaat 26469584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 28277556 - 28277484
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaat 74  Q
    |||||||||||||||||||||| || | |||||||||||||| ||||||||||||||||||| || |||||||    
T  28277556 ttttaaaaagttaaatttatcactttttatcatttttcaatgttatatttctatttttatcctcttatccaat 28277484  T

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Target: chr1; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 32213964 - 32213861
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta-tattct 99  Q
    |||||||||| |||||||||||| || ||| |||||| ||||| | |||||||||||||||||||| ||| |||| | |||| |||||||||| ||||||    
T  32213964 cttttaaaaaattaaatttatcacttttcaccattttccaatgttctatttctatttttatccccttatctaatgtcccaagagcaatggttagtattct 32213865  T
Q  100 cctt 103  Q
    ||||    
T  32213864 cctt 32213861  T

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Target: chr1; HSP #22
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 11386012 - 11386074
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcc 63  Q
    |||||||||||||||||||||||||| | | |||||| |||||||||||||||||||||||||    
T  11386012 cttttaaaaagttaaatttatcaatttttaccattttccaatgctatatttctatttttatcc 11386074  T

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Target: chr1; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 50295508 - 50295432
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcc 77  Q
    ||||||||||||||||||||||| || |||  ||||| |||| ||||||||||||||||| ||||| ||||||||||    
T  50295508 cttttaaaaagttaaatttatcacttttcactattttccaatactatatttctatttttacccccttatccaatgcc 50295432  T

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Target: chr1; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 29966859 - 29966946
Alignment:
Q  6 aaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||| |||||||||||| || |   |||||||||||||||||||| |||||||||||||| |||||||||  ||||| |||||||||    
T  29966859 aaaaaattaaatttatcattttttgccatttttcaatgctatatttatatttttatccccttatccaatgctccaaggacaatggtta 29966946  T

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Target: chr1; HSP #25
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 49901959 - 49902030
Alignment:
Q  3 tttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaat 74  Q
    ||||||||||||||||||||| || ||| |||||| |||| |||||||||||||||||||| || |||||||    
T  49901959 tttaaaaagttaaatttatcacttttcaccattttccaatactatatttctatttttatcctcttatccaat 49902030  T

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Target: chr1; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 6170626 - 6170540
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaa 87  Q
    ||||||||||||||||||||||| || ||   ||||| |||||||||||||||||||||||| | | ||||||| |||||| |||||    
T  6170626 cttttaaaaagttaaatttatcatttttctctattttccaatgctatatttctatttttatctctttatccaatacctcaatggcaa 6170540  T

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Target: chr1; HSP #27
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 50154504 - 50154565
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatc 62  Q
    ||||||||| ||||||||||||| || | |||||||||||||||||||||| ||||||||||    
T  50154504 cttttaaaaggttaaatttatcattttttatcatttttcaatgctatatttatatttttatc 50154565  T

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Target: chr1; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 5945451 - 5945543
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||| |||||||||| || ||| ||||||||||||  ||||||||||||||||  | | |||||||||  ||||| |||||||||    
T  5945451 cttttaaaaagtaaaatttatcacttttcaccatttttcaatgtcatatttctatttttatttcgttatccaatgctccaaggacaatggtta 5945543  T

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Target: chr1; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 8244128 - 8244208
Alignment:
Q  6 aaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatgg 90  Q
    |||||||||||||||||| |    |||||||| ||||| ||||||||||| |||||||||| |||||||||| |||| |||||||    
T  8244128 aaaaagttaaatttatcatt----atcattttccaatgttatatttctatatttatccccttatccaatgccccaagagcaatgg 8244208  T

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Target: chr1; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 45721784 - 45721874
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||||||||||| || | | |||||| ||||| ||||||| |||||||||| ||| |||||||| ||| | |||||||||||    
T  45721784 ttttaaaaagttaaatttatcagtttttaccattttccaatgttatatttttatttttatcaccttatccaatg-ctccaaggcaatggtta 45721874  T

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Target: chr1; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 24140804 - 24140895
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||| |||||||||| |||||||  | ||| |||||| ||||  |||||||||||||||||||||| || ||||||| ||| |||||||||||    
T  24140804 ctttaaaaaagttaagtttatcacgtttcaccattttccaatagtatatttctatttttatccccttat-caatgccccaaaggcaatggtta 24140895  T

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Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 4656048 - 4656121
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatg 75  Q
    |||||||||||||||||||||| || | |  ||||| ||||| ||||||| |||||||||  ||| ||||||||    
T  4656048 ttttaaaaagttaaatttatcactttttactattttccaatgttatatttttatttttatttccttatccaatg 4656121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 17402979 - 17403055
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcc 77  Q
    |||||||||||||||||| |||| || | | ||||||| ||| | ||||||  ||||||||||||| | ||||||||    
T  17402979 cttttaaaaagttaaattcatcactttttaccattttttaatacaatattttaatttttatccccttaaccaatgcc 17403055  T

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Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 41898934 - 41898878
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctattt 57  Q
    |||||||||||||||||| |||| || | | ||||||||||| | ||||||||||||    
T  41898934 cttttaaaaagttaaattcatcactttttaccatttttcaatacaatatttctattt 41898878  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 19389388 - 19389296
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || |||  ||||| |||| ||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  19389388 cttttaaaaagttaaatttatcacttttcacaattttccaatactatatttctatttttatccccttatccaatgccccaagggcaatggtta 19389296  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 45338036 - 45338127
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||||||||||| || ||| |||||||||||| |||||||||||||||||||||| ||||||||||  |||| |||||||||    
T  45338036 ttttaaaaagttaaatttatcatttttcaccatttttcaatgttatatttctatttttatccccttatccaatgcccaaaggacaatggtta 45338127  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 5129534 - 5129442
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||| |||||||||||| || ||||||||||||||||||||||||| ||||||||||||| ||| |||||   ||||||||||||||    
T  5129534 cttttaaaaaattaaatttatcacttttcatcatttttcaatgctatatttcaatttttatccccttatcaaatgctctaagggcaatggtta 5129442  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 21016135 - 21016043
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||| ||||| || | | |||||||||||| |||||||||||||||||||||| |||||| ||||||| |||||||||||    
T  21016135 cttttaaaaagttaaatctatcacttttaaccatttttcaatgttatatttctatttttatccccttatccaaagcctcaaaggcaatggtta 21016043  T

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Target: chr8; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 35930168 - 35930269
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggttat-attctc 100  Q
    |||||||||||||||||||| | || ||||||||||||||| |||||||| ||||||||||  || |||||||||  |||||||||||||||| ||||||    
T  35930168 ttttaaaaagttaaatttattatttttcatcatttttcaatactatatttttatttttatcttcttatccaatgctccaagggcaatggttatcattctc 35930267  T
Q  101 ct 102  Q
    ||    
T  35930268 ct 35930269  T

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Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 21016265 - 21016357
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||| ||||| || ||| |||||||||||  |||||||||||||||||||||| |||||| ||| ||| |||||||||||    
T  21016265 cttttaaaaagttaaatctatcacttttcaccatttttcaatattatatttctatttttatccccttatccaaagccccaaaggcaatggtta 21016357  T

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Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 4989966 - 4990052
Alignment:
Q  3 tttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatg 89  Q
    ||||||||||||||||||||| || |||  ||||| |||||||||||||||||||||||||||| |||||||||  ||||| |||||    
T  4989966 tttaaaaagttaaatttatcatttttcactattttccaatgctatatttctatttttatccccttatccaatgctacaaggacaatg 4990052  T

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Target: chr8; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 6939189 - 6939281
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || ||| |||||||||||| |||||||||||||||||| | | || ||||||| || || |||||||||    
T  6939189 cttttaaaaagttaaatttatcacttgtcaccatttttcaatgttatatttctatttttatctcattattcaatgccccatggacaatggtta 6939281  T

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Target: chr8; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 44874356 - 44874436
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaa 81  Q
    |||||||||| |||||||||||| || ||| |||||||||||| ||||||| |||||||||||||| ||||||||| ||||    
T  44874356 cttttaaaaatttaaatttatcacttttcaccatttttcaatgttatatttatatttttatccccttatccaatgcttcaa 44874436  T

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Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 18068995 - 18069058
Alignment:
Q  3 tttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccct 66  Q
    ||||||||||||||||||||| || ||| |||||| ||||||||||||||||||||||||||||    
T  18068995 tttaaaaagttaaatttatcacttttcaccattttccaatgctatatttctatttttatcccct 18069058  T

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Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 37433298 - 37433369
Alignment:
Q  3 tttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaat 74  Q
    ||||||||||||||||||||| || |||||||||||||||| ||||| || ||||||||||||| |||||||    
T  37433298 tttaaaaagttaaatttatcacttttcatcatttttcaatgttatatgtcgatttttatccccttatccaat 37433369  T

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Target: chr8; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 25249419 - 25249345
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatg 75  Q
    ||||||||||||||||||||||| || ||| |||||| ||||||||||||| |||||||| ||||| ||||||||    
T  25249419 cttttaaaaagttaaatttatcacttttcaccattttccaatgctatatttttatttttacccccttatccaatg 25249345  T

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Target: chr8; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 8018793 - 8018866
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatg 75  Q
    |||||||||||||||||||||| || ||| |||||| ||||  |||||||||||||||||||||| ||||||||    
T  8018793 ttttaaaaagttaaatttatcacttttcaccattttccaatattatatttctatttttatccccttatccaatg 8018866  T

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Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 26672821 - 26672912
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||| |||||||||||  || | |||||||| |||||||||||||||||||||||||| | ||||||| || ||||| |||||||||    
T  26672821 cttttaaaaaattaaatttatccttttttatcattttccaatgctatatttctatttttatccctttatccaatacc-caaggacaatggtta 26672912  T

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Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 26195451 - 26195386
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccct 66  Q
    ||||||||||||||||||||||| || |||  ||||| ||||| ||||||||||||||||||||||    
T  26195451 cttttaaaaagttaaatttatcacttttcacaattttccaatgttatatttctatttttatcccct 26195386  T

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Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 10694838 - 10694911
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaat 74  Q
    ||||||||||||||||||||||| || | | ||||||| ||| |||||||| |||||| ||||||| |||||||    
T  10694838 cttttaaaaagttaaatttatcactttttaccatttttaaatactatatttttattttaatccccttatccaat 10694911  T

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Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 3174491 - 3174563
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaa 73  Q
    |||||||||||| |||||||| | || ||| |||||| ||||   ||||||||||||||||||||||||||||    
T  3174491 cttttaaaaagtcaaatttataatttttcaccattttccaatataatatttctatttttatcccctcatccaa 3174563  T

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Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 6433575 - 6433635
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttat 61  Q
    ||||||||||||||||||||| | || | | |||||||||||||||||||| |||||||||    
T  6433575 cttttaaaaagttaaatttataactttttaccatttttcaatgctatatttttatttttat 6433635  T

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Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 26892817 - 26892879
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcc 63  Q
    ||||||||||||||||||||||| || | |  ||||||||||  |||||||||||||||||||    
T  26892817 cttttaaaaagttaaatttatcattttttacaatttttcaatattatatttctatttttatcc 26892879  T

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Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 14855462 - 14855397
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccct 66  Q
    ||||||||| ||||||||||||  || |||  |||||| ||| |||||||||||||||||||||||    
T  14855462 cttttaaaatgttaaatttatctcttttcactattttttaatactatatttctatttttatcccct 14855397  T

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Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 7532816 - 7532892
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcc 77  Q
    ||||||||||  |||||| |||| || ||| |||||| |||| | ||||||||||||||||||||| | ||||||||    
T  7532816 cttttaaaaacctaaattcatcacttttcaccattttccaatacaatatttctatttttatccccttaaccaatgcc 7532892  T

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Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 33741533 - 33741472
Alignment:
Q  30 atcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||| |||||||| |||||||||| | | ||||||||  ||||||||||||||||    
T  33741533 atcatttttcaatactatatttttatttttatctcattatccaatg--tcaagggcaatggtta 33741472  T

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Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 18808953 - 18808990
Alignment:
Q  56 ttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  18808953 ttttatccccttatccaatgccccaagggcaatggtta 18808990  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 32415600 - 32415688
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatg 89  Q
    ||||||||||||||||||||| | || |||  |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  32415600 cttttaaaaagttaaatttatgacttttcacaatttttcaatgctatatttctatttttatccctttatccaatgcctcaagggcaatg 32415688  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 35306363 - 35306455
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || |||||||||| ||||| |||||||||||||||||||||| |||||||  | |||||||||||||||    
T  35306363 cttttaaaaagttaaatttatcacttttcatcattttccaatgttatatttctatttttatccccttatccaattgcccaagggcaatggtta 35306455  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 36730231 - 36730139
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || ||| ||||||||||| |||||||| |||||||||||||| ||||||||||  ||||||||||||||    
T  36730231 cttttaaaaagttaaatttatcacttttcaccatttttcaatactatatttatatttttatccccttatccaatgccataagggcaatggtta 36730139  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 46317517 - 46317609
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || |||||||||| ||||| ||||||||||||||||||  || |||||||| |||||||||||||||||    
T  46317517 cttttaaaaagttaaatttatcatttttcatcattttccaatgttatatttctatttttatctacttatccaatgtctcaagggcaatggtta 46317609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 4759928 - 4759836
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||| | |||||||||  |||  ||||||||||    
T  4759928 cttttaaaaagttaaatttatcacttttcaccatttttcaatgctatatttctatttttatccctttatccaatgctccaaatgcaatggtta 4759836  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 8715579 - 8715488
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || ||| |||||| |||||||||||||||||||||| ||||| ||||||||||  |||| |||||||||    
T  8715579 cttttaaaaagttaaatttatcacttttcaccattttccaatgctatatttctattttta-ccccttatccaatgccctaaggacaatggtta 8715488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 9067466 - 9067375
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || ||| |||||| |||||||||||||||||||||| ||||| ||||||||||  |||| |||||||||    
T  9067466 cttttaaaaagttaaatttatcacttttcaccattttccaatgctatatttctattttta-ccccttatccaatgccctaaggacaatggtta 9067375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 29915653 - 29915561
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||| | || | | |||||| |||| |||||||| |||||||||||||| |||||| ||| |||||||||||||||    
T  29915653 cttttaaaaagttaaatttataattttttaccattttccaatactatatttttatttttatccccttatccaacgccccaagggcaatggtta 29915561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 29964806 - 29964714
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||| | || | | |||||| |||| |||||||| |||||||||||||| |||||| ||| |||||||||||||||    
T  29964806 cttttaaaaagttaaatttataattttttaccattttccaatactatatttttatttttatccccttatccaacgccccaagggcaatggtta 29964714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 37509142 - 37509234
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || |||  ||||| |||||||  ||||| ||||||||||||| |||||||||| ||| |||||||||||    
T  37509142 cttttaaaaagttaaatttatcacttttcactattttccaatgctgcatttcaatttttatccccttatccaatgccccaaaggcaatggtta 37509234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 44570464 - 44570372
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||||| |||||| || ||| |||||| ||||| |||||||||||||| ||||| | ||| |||||| |||||||||||||||    
T  44570464 cttttaaaaagttaaagttatcacttttcaccattttccaatgttatatttctattttgatccctttatcgaatgccccaagggcaatggtta 44570372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 1803919 - 1804007
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatg 89  Q
    |||||| |||||||||||||||| || | | | |||||||||  |||||||||||||||||||||| |||||||||| ||||| |||||    
T  1803919 cttttacaaagttaaatttatcattttttaccctttttcaataatatatttctatttttatccccttatccaatgccccaaggacaatg 1804007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 8847530 - 8847442
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatg 89  Q
    |||||||||||||||||| |||| || | | |||||| ||||| |||||||||||||||||||||| |||||||| | |||| ||||||    
T  8847530 cttttaaaaagttaaattaatcactttttaccattttccaatgttatatttctatttttatccccttatccaatgtcccaagtgcaatg 8847442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 51817390 - 51817314
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcc 77  Q
    ||||||||||||||||||||||| || ||| |||||| ||||||||||||| ||||||||||| || || |||||||    
T  51817390 cttttaaaaagttaaatttatcacttttcaccattttccaatgctatatttttatttttatcctcttattcaatgcc 51817314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 10854890 - 10854982
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctattttt----atcccctcatccaatgcctcaagggcaatg 89  Q
    ||||||||||||||||||||| | || ||| |||||| |||||||||||||||| ||||    ||||||| |||||||||| |||||||||||    
T  10854890 cttttaaaaagttaaatttattagttttcaccattttccaatgctatatttctacttttatccatccccttatccaatgccccaagggcaatg 10854982  T

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Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 20227458 - 20227405
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttcta 54  Q
    ||||||| ||||||||||||||| || |||||||||||||||||||||||||||    
T  20227458 cttttaagaagttaaatttatcacttttcatcatttttcaatgctatatttcta 20227405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 12051070 - 12051142
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaat 74  Q
    |||||||||||||||||||||| || |||| ||||| |||| ||||||||||||||||||  ||| |||||||    
T  12051070 ttttaaaaagttaaatttatcatttttcattattttacaatactatatttctatttttatttccttatccaat 12051142  T

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Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 25102386 - 25102308
Alignment:
Q  15 aatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||| || | | |||||| |||||||||||||||||||||||| | | |||||||| | |||||||||||||||    
T  25102386 aatttatcactttttaccattttccaatgctatatttctatttttatctcattatccaatgtcccaagggcaatggtta 25102308  T

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Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 48136790 - 48136709
Alignment:
Q  11 gttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||| || |||  ||||| ||||||||||||||||||||||| |||| ||||||| || ||||| |||||||||    
T  48136790 gttaaatttatcactt-tcacaattttccaatgctatatttctatttttattcccttatccaataccccaaggacaatggtta 48136709  T

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Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 12905360 - 12905296
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccct 66  Q
    ||||||||| ||||||||||||| || ||| |||||| ||||| ||||||||||||||||||||||    
T  12905360 cttttaaaatgttaaatttatcatttttcaccatttt-caatgttatatttctatttttatcccct 12905296  T

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Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 41346348 - 41346397
Alignment:
Q  44 ctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| |||||||||| ||||| |||||||||    
T  41346348 ctatatttctatttttatccccttatccaatgccccaaggacaatggtta 41346397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 44695748 - 44695675
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatg 75  Q
    |||||||||||||||||||||| || ||| |||||| |||   ||||||| |||||||||||||| ||||||||    
T  44695748 ttttaaaaagttaaatttatcatttttcaccattttccaagattatatttatatttttatccccttatccaatg 44695675  T

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Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 31647354 - 31647417
Alignment:
Q  30 atcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||||||||||| |||||||||||||| || ||||| |  |||| |||||||||    
T  31647354 atcatttttcaatgctatatttatatttttatccccttattcaatgtccgaaggacaatggtta 31647417  T

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Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 52570813 - 52570872
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctattttta 60  Q
    |||||||||||||| |||||||| || ||| |||||| |||| |||||||||||||||||    
T  52570813 cttttaaaaagttatatttatcacttttcaccattttccaatactatatttctattttta 52570872  T

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Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 39974884 - 39974826
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctattttt 59  Q
    |||||||||||||||||| |||| |||||||||||||  ||||| |||||| |||||||    
T  39974884 cttttaaaaagttaaattcatcacttctcatcattttctaatgcaatatttttattttt 39974826  T

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Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 18864 - 18780
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggca 86  Q
    ||||||||||||||||| |||| || ||| | |||  |||||| |||||||||||||||||| || | ||||||||  |||||||    
T  18864 ttttaaaaagttaaattcatcacttttcaccgtttcccaatgcaatatttctatttttatcctcttaaccaatgccctaagggca 18780  T

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Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 13647110 - 13647027
Alignment:
Q  5 taaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaat 88  Q
    |||||||||||||| |||| || |||  |||||||||| | |||||||||||||||||| || | | ||||| |||| ||||||    
T  13647110 taaaaagttaaattcatcacttttcactatttttcaatccaatatttctatttttatcctcttaacaaatgcttcaaaggcaat 13647027  T

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Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 34060844 - 34060786
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctattttt 59  Q
    |||||||||||||||||| |||| || ||| ||||||||||| | |||||| |||||||    
T  34060844 cttttaaaaagttaaattcatcacttttcaccatttttcaatacaatatttttattttt 34060786  T

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Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 39436496 - 39436558
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcc 63  Q
    ||||||||||||||||||  | | || ||| ||||||||||| | ||||||||||||||||||    
T  39436496 cttttaaaaagttaaattctttatttttcaccatttttcaatacaatatttctatttttatcc 39436558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 21324547 - 21324603
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttt 58  Q
    ||||||||||||||||| ||||| || |||||| ||| |||||| |||||||||||||    
T  21324547 cttttaaaaagttaaatctatcacttttcatca-tttccaatgcaatatttctatttt 21324603  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 765228 - 765136
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || |||  ||||| ||||| |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  765228 cttttaaaaagttaaatttatcacttttcacaattttccaatgttatatttctatttttatccccttatccaatgccccaagggcaatggtta 765136  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 17603842 - 17603930
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatg 89  Q
    ||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||| | | |||||||||| |||||||||||    
T  17603842 cttttaaaaagttaaatttatcattttttatcatttttcaatgctatatttctatttttatcgcgttatccaatgccccaagggcaatg 17603930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 39401612 - 39401521
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||||||| |||| || ||| |||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  39401612 cttttaaaaagttaaatt-atcacttttcaccatttttcaatgttatatttctatttttatccccttatccaatgccccaagggcaatggtta 39401521  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 39085870 - 39085778
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || | |||||||| ||||| |||||||||||||||||||| | |||||||| | |||| ||||||||||    
T  39085870 cttttaaaaagttaaatttatcactttttatcattttccaatgttatatttctatttttatccctttatccaatgtcccaagagcaatggtta 39085778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 13997981 - 13997890
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||||||||||| || |||  ||||||||||||||||||||||||||||| |||| ||| ||| ||||||  ||||||||||    
T  13997981 ttttaaaaagttaaatttatcatttttcacaatttttcaatgctatatttctatttttattcccttatctaattcctcaaaagcaatggtta 13997890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 33726411 - 33726498
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaat 88  Q
    |||||| |||||||||||||| | || ||| ||||||||||| |||||||| |||||||||||||| |||||||||| ||||||||||    
T  33726411 cttttagaaagttaaatttattatttttcaccatttttcaatactatatttttatttttatccccttatccaatgccccaagggcaat 33726498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 16361597 - 16361689
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||| ||||||||||||||||||| | | |||||| ||||| ||||||||||||||||| |||| |||||||||  |||||||||| ||||    
T  16361597 cttttataaagttaaatttatcaatttttaccattttccaatgttatatttctatttttattcccttatccaatgctccaagggcaattgtta 16361689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 44173151 - 44173211
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatc 62  Q
    ||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||    
T  44173151 ttttaaaaaattaaatttatcatttttcatcatttttcaatgctatatttctatttttatc 44173211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 35445363 - 35445276
Alignment:
Q  6 aaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||||||| || ||| |||||||||||| ||||||| |||||||||||||| || |||||||  ||||| ||||||||    
T  35445363 aaaaagttaaatttatcacttttcaccatttttcaatgttatatttatatttttatccccttattcaatgccctaagggtaatggtta 35445276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 43140400 - 43140309
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||||||||||| || || ||||||||||||| ||||||| ||||||||||| || |||||||  ||||||| |||| ||||    
T  43140400 ttttaaaaagttaaatttatcatttttcgtcatttttcaatgttatatttttatttttatcctcttatccaatatctcaaggacaatagtta 43140309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 2966571 - 2966645
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatg 75  Q
    |||||||||| |||||||||||| || ||| |||||| ||||| |||||||||||||||||||||| ||||||||    
T  2966571 cttttaaaaaattaaatttatcacttttcaccattttccaatgttatatttctatttttatccccttatccaatg 2966645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 862623 - 862712
Alignment:
Q  4 ttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||||||||| || ||| |||||| |||| ||||||||||||||||||||| | || |||||||  ||||||||| ||||    
T  862623 ttaaaaagttaaatttatcacttttcaccattttccaatactatatttctatttttatcccattattcaatgccctaagggcaattgtta 862712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 41436509 - 41436574
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccct 66  Q
    ||||||||||||||| ||||||| || ||||||||||||||| |||||||| ||||||||||||||    
T  41436509 cttttaaaaagttaagtttatcacttttcatcatttttcaatactatatttttatttttatcccct 41436574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 6999233 - 6999309
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcc 77  Q
    ||||||||||||||||||||||| || ||| |||||| |||| ||||||||||||||||||| ||| ||||| ||||    
T  6999233 cttttaaaaagttaaatttatcatttttcaccattttccaatactatatttctatttttatctccttatccattgcc 6999309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 17056135 - 17056044
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || ||| ||||||| | || ||||||||| |||||||||| | ||||||||||  ||||||||||||||    
T  17056135 cttttaaaaagttaaatttatcacttttcaccattttt-agtgttatatttctttttttatccctttatccaatgccctaagggcaatggtta 17056044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 17068582 - 17068491
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || ||| ||||||| | || ||||||||| |||||||||| | ||||||||||  ||||||||||||||    
T  17068582 cttttaaaaagttaaatttatcacttttcaccattttt-agtgttatatttctttttttatccctttatccaatgccctaagggcaatggtta 17068491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 17074565 - 17074474
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||||||||||||||||| || ||| ||||||| | || |||||||||||||||||||| | ||| ||||||  ||||||||||||||    
T  17074565 cttttaaaaagttaaatttatcacttttcaccattttt-agtgttatatttctatttttatccctttatctaatgccctaagggcaatggtta 17074474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 33864386 - 33864478
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||||| ||||||||||| | || ||| |||||| |||||| |||||| ||||||||||| || || ||||| |||||||||||||||||    
T  33864386 cttttaaaatgttaaatttattacttttcaccattttccaatgcgatatttttatttttatcctcttattcaatgtctcaagggcaatggtta 33864478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 27495155 - 27495246
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||| ||||||||||||| || ||| ||||||  |||| ||||||| |||||||||||||| || ||||||| |||| ||||||||||    
T  27495155 ttttaaaatgttaaatttatcacttttcaccattttctaatgttatatttttatttttatccccttattcaatgccccaagtgcaatggtta 27495246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 9201573 - 9201485
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatg 89  Q
    ||||||||||||||||||||||| || ||| ||||||| |||  |||||| ||||||||||| | | |||||||| ||||||| |||||    
T  9201573 cttttaaaaagttaaatttatcacttttcaccattttttaatattatattcctatttttatctcattatccaatgtctcaaggacaatg 9201485  T

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Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 44299759 - 44299683
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcc 77  Q
    ||||||||| ||||||||||||| || ||| |||||||| | ||||||||||||||||||||| || | ||||||||    
T  44299759 cttttaaaatgttaaatttatcacttttcaccatttttcgaggctatatttctatttttatcctcttacccaatgcc 44299683  T

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Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 1321200 - 1321291
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    ||||||| |||||||||||| | || | | |||||| ||||| ||||||||||||||||||| || |||||||||  ||||| |||||||||    
T  1321200 ttttaaagagttaaatttattattttttaccattttccaatgttatatttctatttttatcctcttatccaatgctccaaggacaatggtta 1321291  T

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Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 17118450 - 17118377
Alignment:
Q  2 ttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatg 75  Q
    |||||||||||||||||||||| || ||| |||||| || |  |||||||||||||||||||| | ||||||||    
T  17118450 ttttaaaaagttaaatttatcatttttcaacattttccagtattatatttctatttttatccctttatccaatg 17118377  T

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Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 17095144 - 17095069
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcc 77  Q
    ||||||||||||||||||||||| || ||| ||||||| |  | |||||||||||||||||||| | ||||||||||    
T  17095144 cttttaaaaagttaaatttatcacttttcaccattttt-agagttatatttctatttttatccctttatccaatgcc 17095069  T

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Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 11445364 - 11445313
Alignment:
Q  6 aaaaagttaaatttatcaattctcatcatttttcaatgctatatttctattt 57  Q
    |||||||||||||||||| || ||| |||||||||||| |||||||||||||    
T  11445364 aaaaagttaaatttatcatttttcaccatttttcaatgttatatttctattt 11445313  T

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Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 464826 - 464890
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctc-atcatttttcaatgctatatttctatttttatccc 64  Q
    |||||||||||||||| |||||| || |  | |||||||||||| ||||||||||||||||||||    
T  464826 cttttaaaaagttaaaattatcatttttttaccatttttcaatgttatatttctatttttatccc 464890  T

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Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 30831649 - 30831709
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttat 61  Q
    |||||||||||||||||| |||| || | || |||||| ||||| ||||||||||||||||    
T  30831649 cttttaaaaagttaaattcatcattttttataattttttaatgcaatatttctatttttat 30831709  T

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Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 2239613 - 2239675
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcc 63  Q
    |||||||||||||||||| |||| || | | ||||||||| ||| |||||||||| |||||||    
T  2239613 cttttaaaaagttaaattcatcattttttaccatttttcattgcaatatttctatctttatcc 2239675  T

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Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 8327011 - 8327073
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcc 63  Q
    ||||||||||||||||||| ||| || |||| |||| |||| || |||||| |||||||||||    
T  8327011 cttttaaaaagttaaatttttcacttttcattatttctcaaagcaatatttttatttttatcc 8327073  T

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Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 10900328 - 10900266
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcc 63  Q
    |||||||||| | ||||| |||| || | ||||||||||||||  ||||||||||||||||||    
T  10900328 cttttaaaaaataaaattcatcactttttatcatttttcaatgtgatatttctatttttatcc 10900266  T

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Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 37230253 - 37230311
Alignment:
Q  3 tttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttat 61  Q
    ||||||||||||| ||||||| || ||| ||||||||||| | ||||||||||| ||||    
T  37230253 tttaaaaagttaagtttatcacttttcaccatttttcaatacaatatttctattcttat 37230311  T

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Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 23685689 - 23685649
Alignment:
Q  53 tatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||| | |||||||||| |||||||||||||||    
T  23685689 tatttttatccctttatccaatgccccaagggcaatggtta 23685649  T

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Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 31167625 - 31167661
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttt 37  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  31167625 cttttaaaaagttaaattcatcaattttcatcatttt 31167661  T

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Target: scaffold0062 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 16849 - 16758
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||| |||||||| || |||  ||||| |||||||||||||||||||||||||||| ||||||||||  | ||||||||||||    
T  16849 cttttaaaaagttacatttatcatttttcactatttt-caatgctatatttctatttttatccccttatccaatgccctatgggcaatggtta 16758  T

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Target: scaffold0062; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 27017 - 26926
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||| |||||||| || |||  ||||| |||||||||||||||||||||||||||| ||||||||||  | ||||||||||||    
T  27017 cttttaaaaagttacatttatcatttttcactatttt-caatgctatatttctatttttatccccttatccaatgccctatgggcaatggtta 26926  T

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Target: scaffold0062; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 37183 - 37092
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgctatatttctatttttatcccctcatccaatgcctcaagggcaatggtta 93  Q
    |||||||||||||| |||||||| || |||  ||||| |||||||||||||||||||||||||||| ||||||||||  | ||||||||||||    
T  37183 cttttaaaaagttacatttatcatttttcactatttt-caatgctatatttctatttttatccccttatccaatgccctatgggcaatggtta 37092  T

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Target: scaffold0002 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 392210 - 392113
Alignment:
Q  1 cttttaaaaagttaaatttatcaattctcatcatttttcaatgct----atatttctatttttatcccctcatccaatgcctcaagggcaatggttat 94  Q
    ||||||||||||||||||||||| || | | ||||||||||||||    ||||||||| ||||||||| | ||| ||| |||||||||||||||||||    
T  392210 cttttaaaaagttaaatttatcactttttaccatttttcaatgctatatatatttctaattttatccctttatctaattcctcaagggcaatggttat 392113  T

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Target: scaffold0809 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 4337 - 4285
Alignment:
Q  12 ttaaatttatcaattctcatcatttttcaatgctatatttctatttttatccc 64  Q
    |||||||||||| || |||  ||||| ||||||||||||| ||||||||||||    
T  4337 ttaaatttatcacttttcacaattttccaatgctatatttttatttttatccc 4285  T

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