View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_low_36 (Length: 311)
Name: NF1492_low_36
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 40383421 - 40383111
Alignment:
| Q |
1 |
aacaaatgttcttccatatttcctggctaaatatcaagcgcgtaatacttaagagattcaactatttgtcagttgcgtcacattatgtcggcatattaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
40383421 |
aacaaatgttcttccatatttcctggctaaatatcaaactcgtaatacttaagagattcaactatttatcagttgcgtctcattatgtcggcatattaaa |
40383322 |
T |
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| Q |
101 |
tagttttaccctca--------------tttaaattgaattatgtaaagggaaaactagccacacacagaaggcttagcaaatttcttaccttttcctcg |
186 |
Q |
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|||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40383321 |
tagttttaccctcaggtatgtataggcatttaaatttaattatgcaaagggaaaactagccacacacagaaggcttagcaaatttcttaccttttcctcg |
40383222 |
T |
|
| Q |
187 |
atgaattttgaccagaaacgaacattggacctctcataagcatcttgtggcaatagaggggactgaggccaagtctcatcaatatattcaacaataacca |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
40383221 |
atgaattttgaccagaaacgaacattggacctctcataagcatcttgtggcaatagagggaacggaggccaagtctcatcaatatattcaacaataacca |
40383122 |
T |
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| Q |
287 |
ttgactctgcc |
297 |
Q |
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||||||||||| |
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| T |
40383121 |
ttgactctgcc |
40383111 |
T |
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