View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_low_39 (Length: 302)
Name: NF1492_low_39
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 49679245 - 49679535
Alignment:
| Q |
1 |
tgtcagtggtcacttgatattcttgatgcttgggcgccaatgggacctaaagggaagattagagatgaagctgggaagattcttactagggagttaaaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49679245 |
tgtcagtggtcacttgatattcttgatgcttgggcaccaatgggacctaaagggaagattagagatgaagctgggaagattcttactagggagttaaaga |
49679344 |
T |
|
| Q |
101 |
atcgaccggttttcgaagcagatgatcaatctgctatggtttatttgttggcaactgggagggaacaatggggtgggaaagtttatcttgagaatcatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49679345 |
atcgaccggttttcgaagcagatgatcaatctgctatggtttatttgttggcaactgggagggaacaatggggtgggaaagtttatcttgagaatcatta |
49679444 |
T |
|
| Q |
201 |
ttatttgcatggttattgggggattttggttgatagatatgaagagatgattgagaattatcatcctggttttggtgatcatagatggccc |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49679445 |
ttatttgcatggttattgggggattttggttgatagatatgaagagatgattgagaattatcatcctggttttggtgatcatagatggccc |
49679535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 272
Target Start/End: Original strand, 45168949 - 45169035
Alignment:
| Q |
186 |
tcttgagaatcattattatttgcatggttattgggggattttggttgatagatatgaagagatgattgagaattatcatcctggttt |
272 |
Q |
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|||||||||| ||| ||||||||||||||||||| ||||||||| | ||||| |||||||||||||| |||||||| ||||| |
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| T |
45168949 |
tcttgagaattcttactatttgcatggttattgggctgggttggttgatcggtatgaggagatgattgagaagtatcatccgggttt |
45169035 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 20181259 - 20180970
Alignment:
| Q |
1 |
tgtcagtggtcacttgatattcttgatgcttgggcgccaatgggacctaaagggaagattagagatgaagctgggaagattcttactagggagttaaaga |
100 |
Q |
| |
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|||||||||||| | |||||||||||||||||||| ||||||||||| || ||||| |||| |||||||| ||||| || ||||| | || | || |
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| T |
20181259 |
tgtcagtggtcattggatattcttgatgcttgggcaccaatgggaccgaaggggaaagttagggatgaagcggggaaaatacttacgcgcgaactcaaag |
20181160 |
T |
|
| Q |
101 |
atcgaccggttttcgaagcagatgatcaatctgctatggtttatttgttggcaactgggagggaacaatggggtgggaaagtttatcttgagaatcatta |
200 |
Q |
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| | || ||||| ||||| |||||||||||||||||||||||||||||||| | | || |||| | ||||||| || ||||||||||||||| ||| |
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| T |
20181159 |
gtaggccagtttttgaagcggatgatcaatctgctatggtttatttgttggctaaggagaaggaaaagtggggtgataaggtttatcttgagaatggtta |
20181060 |
T |
|
| Q |
201 |
ttatttgcatggttattgggggattttggttgatagatatgaagagatgattgagaattatcatcctggttttggtgatcatagatggcc |
290 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20181059 |
ttacttgcatggttattgggggattttggttgatagatatgaggagatgattgagaattatcatcctggttttggtgatcataggtggcc |
20180970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 44268607 - 44268318
Alignment:
| Q |
1 |
tgtcagtggtcacttgatattcttgatgcttgggcgccaatgggacctaaagggaagattagagatgaagctgggaagattcttactagggagttaaaga |
100 |
Q |
| |
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|||||||||||| | |||||||||||||||||||| ||||||||||| || ||||| |||| |||||||| ||||| || ||||| | || | || |
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| T |
44268607 |
tgtcagtggtcattggatattcttgatgcttgggcaccaatgggaccgaaggggaaagttagggatgaagcggggaaaatacttacgcgcgaactcaaag |
44268508 |
T |
|
| Q |
101 |
atcgaccggttttcgaagcagatgatcaatctgctatggtttatttgttggcaactgggagggaacaatggggtgggaaagtttatcttgagaatcatta |
200 |
Q |
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| | || ||||| ||||| |||||||||||||||||||||||||||||||| | | || |||| | ||||||| || ||||||||||||||| ||| |
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| T |
44268507 |
gtaggccagtttttgaagcggatgatcaatctgctatggtttatttgttggctaaggagaaggaaaagtggggtgataaggtttatcttgagaatggtta |
44268408 |
T |
|
| Q |
201 |
ttatttgcatggttattgggggattttggttgatagatatgaagagatgattgagaattatcatcctggttttggtgatcatagatggcc |
290 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44268407 |
ttacttgcatggttattgggggattttggttgatagatatgaggagatgattgagaattatcatcctggttttggtgatcataggtggcc |
44268318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 13714078 - 13713998
Alignment:
| Q |
186 |
tcttgagaatcattattatttgcatggttattgggggattttggttgatagatatgaagagatgattgagaattatcatcc |
266 |
Q |
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|||||||||| || |||||||||||||||||||| ||||||||| | |||||||||||||| ||||| |||||||| |
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| T |
13714078 |
tcttgagaattctttttatttgcatggttattgggctgggttggttgatcggtatgaagagatgatggagaagtatcatcc |
13713998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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