View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1492_low_47 (Length: 286)

Name: NF1492_low_47
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1492_low_47
NF1492_low_47
[»] chr3 (3 HSPs)
chr3 (1-271)||(40395131-40395401)
chr3 (195-271)||(12002583-12002659)
chr3 (77-144)||(51981796-51981864)
[»] chr4 (1 HSPs)
chr4 (72-271)||(18146345-18146545)
[»] chr7 (2 HSPs)
chr7 (72-271)||(25631799-25631998)
chr7 (91-246)||(48191582-48191737)
[»] chr5 (2 HSPs)
chr5 (89-271)||(43173424-43173606)
chr5 (167-267)||(37520394-37520494)
[»] chr8 (1 HSPs)
chr8 (72-186)||(18412023-18412138)


Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 40395401 - 40395131
Alignment:
Q  1 aagaatggttttgagttcaattcttacctccggttaataccatcatatatcttctttcattaatttattgctctagacaataatatgctttgaatccatt 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40395401 aagagtggttttgagttcaattcttacctccggttaataccatcatatatcttctttcattaatttattgctctagacaataatatgctttgaatccatt 40395302  T
Q  101 tcatttgaattgatattttctcaatcattattattgtgaaaaaatgtttacaataattagtcttacacaatttatttgtgaaaatacacgtattgctaaa 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40395301 tcatttgaattgatattttctctatcattattattgtgaaaaaatgtttacaataattagtcttacgcaatttatttgtgaaaatacacgtattgctaaa 40395202  T
Q  201 atgaaaaatggacttcatctaaaactaaaatcaggccaagttataataattcaaatgaattctgtaataat 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40395201 atgaaaaatggacttcatctaaaactaaaatcaggccaagttataataattcaaatgaattctgtaataat 40395131  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 12002659 - 12002583
Alignment:
Q  195 gctaaaatgaaaaatggacttcatctaaaactaaaatcaggccaagttataataattcaaatgaattctgtaataat 271  Q
    |||||||||||||||||||  ||||||||||||||||| || ||||||||||   |||||||| |||||||||||||    
T  12002659 gctaaaatgaaaaatggaccacatctaaaactaaaatcgggtcaagttataaatgttcaaatggattctgtaataat 12002583  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 51981796 - 51981864
Alignment:
Q  77 acaataatat-gctttgaatccatttcatttgaattgatattttctcaatcattattattgtgaaaaaa 144  Q
    |||||||||| | ||| ||||||||  |||||||||| ||||||||| |||||||||||||||||||||    
T  51981796 acaataatatcgttttaaatccattctatttgaattggtattttctccatcattattattgtgaaaaaa 51981864  T

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Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 72 - 271
Target Start/End: Complemental strand, 18146545 - 18146345
Alignment:
Q  72 tctagacaataatat-gctttgaatccatttcatttgaattgatattttctcaatcattattattgtgaaaaaatgtttacaataattagtcttacacaa 170  Q
    |||||||| |||||| | |||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||  ||||    
T  18146545 tctagacagtaatatcgttttgaatccattccatttgaattggtattttctccatcattattattgtgaaaaaacgtttacaataattagtcttggacaa 18146446  T
Q  171 tttatttgtgaaaatacacgtattgctaaaatgaaaaatggacttcatctaaaactaaaatcaggccaagttataataattcaaatgaattctgtaataa 270  Q
    |||||||||||||||| | |||| |||||||||||||||||||  ||||||||||||||||| || ||||||||||   |||||||| ||||||||||||    
T  18146445 tttatttgtgaaaatatatgtatagctaaaatgaaaaatggaccacatctaaaactaaaatcgggtcaagttataactgttcaaatggattctgtaataa 18146346  T
Q  271 t 271  Q
    |    
T  18146345 t 18146345  T

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Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 72 - 271
Target Start/End: Complemental strand, 25631998 - 25631799
Alignment:
Q  72 tctagacaataatat-gctttgaatccatttcatttgaattgatattttctcaatcattattattgtgaaaaaatgtttacaataattagtcttacacaa 170  Q
    |||||||| |||||| | |||||||||||| |||||||| || ||||||||| ||||||||||||||||||||| |||||||||||||||||||  ||||    
T  25631998 tctagacagtaatatcgttttgaatccattccatttgaaatggtattttctccatcattattattgtgaaaaaacgtttacaataattagtcttggacaa 25631899  T
Q  171 tttatttgtgaaaatacacgtattgctaaaatgaaaaatggacttcatctaaaactaaaatcaggccaagttataataattcaaatgaattctgtaataa 270  Q
    |||||||||||||||| | |||| |||||||| ||||||||||  |||||||| |||||||| || |||||||||||  |||||||| ||||||||||||    
T  25631898 tttatttgtgaaaatatatgtatagctaaaataaaaaatggaccacatctaaatctaaaatcgggtcaagttataat-gttcaaatggattctgtaataa 25631800  T

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Target: chr7; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 91 - 246
Target Start/End: Complemental strand, 48191737 - 48191582
Alignment:
Q  91 tgaatccatttcatttgaattgatattttctcaatcattattattgtgaaaaaatgtttacaataattagtcttacacaatttatttgtgaaaatacacg 190  Q
    |||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||| | |    
T  48191737 tgaatccattccatttgaattggtattttctccatcattattattgtgaaaaaacgtttacaataattagtcttggacaatttatttgtgaaaatatatg 48191638  T
Q  191 tattgctaaaatgaaaaatggacttcatctaaaactaaaatcaggccaagttataa 246  Q
    ||| |||||||||||||||||||  ||||||||||||||||| || ||||||||||    
T  48191637 tatagctaaaatgaaaaatggaccacatctaaaactaaaatcgggtcaagttataa 48191582  T

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Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 89 - 271
Target Start/End: Original strand, 43173424 - 43173606
Alignment:
Q  89 tttgaatccatttcatttgaattgatattttctcaatcattattattgtgaaaaaatgtttacaataattagtcttacacaatttatttgtgaaaataca 188  Q
    |||||||||||| ||||||||||| ||||||||  ||||||||||||||||||||| |||||||||||||||| ||  ||||||||||| |||||||| |    
T  43173424 tttgaatccattccatttgaattggtattttcttcatcattattattgtgaaaaaacgtttacaataattagttttggacaatttatttatgaaaatata 43173523  T
Q  189 cgtattgctaaaatgaaaaatggacttcatctaaaactaaaatcaggccaagttataataattcaaatgaattctgtaataat 271  Q
     |||| |||||||||||||||||||  |||||||||||||| || || ||||||||||  ||||||||| |||||||||||||    
T  43173524 tgtatagctaaaatgaaaaatggaccacatctaaaactaaagtcgggtcaagttataactattcaaatggattctgtaataat 43173606  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 267
Target Start/End: Original strand, 37520394 - 37520494
Alignment:
Q  167 acaatttatttgtgaaaatacacgtattgctaaaatgaaaaatggacttcatctaaaactaaaatcaggccaagttataataattcaaatgaattctgta 266  Q
    ||||||||||  |||||||| |  ||| ||| |||||||||||||||  ||||||||||||||||| || |||||| |||   |||||||| ||||||||    
T  37520394 acaatttattaatgaaaatatatttatagctcaaatgaaaaatggaccccatctaaaactaaaatcgggtcaagttctaactgttcaaatggattctgta 37520493  T
Q  267 a 267  Q
    |    
T  37520494 a 37520494  T

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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 72 - 186
Target Start/End: Original strand, 18412023 - 18412138
Alignment:
Q  72 tctagacaataatat-gctttgaatccatttcatttgaattgatattttctcaatcattattattgtgaaaaaatgtttacaataattagtcttacacaa 170  Q
    |||||||| |||||| | |||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||  ||||    
T  18412023 tctagacagtaatatcgttttgaatccattccatttgaattggtattttctccatcattattattgtgaaaaaacgtttacaataattagtctttgacaa 18412122  T
Q  171 tttatttgtgaaaata 186  Q
    ||||||||||||||||    
T  18412123 tttatttgtgaaaata 18412138  T

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