View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1492_low_48 (Length: 285)

Name: NF1492_low_48
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1492_low_48
NF1492_low_48
[»] chr5 (2 HSPs)
chr5 (10-267)||(25259140-25259408)
chr5 (10-267)||(25322930-25323198)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 267
Target Start/End: Complemental strand, 25259408 - 25259140
Alignment:
Q  10 attatactagaccatacttaacgaagaggaactgttaactagaattgtatcttgattttttcaaaataaaacttgannnnnnn---caatgttaaattag 106  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||    
T  25259408 attatactagaccatacttaacaaagaggaactattaactagaattgtatcttgattttttcaaaataaaacttgataatttttttcaatgttaaattag 25259309  T
Q  107 atatggtttctaaaggactttggaatttagttgttattagaatctaatattttgaataaactcacagtattaaaagtatcattc--------gnnnnnnn 198  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |           
T  25259308 atatagtttctaaaggactttggaatttagttgttattagaatctaatattttgaataaactcacagtattaaaagtatcattcgtttttttgttttttg 25259209  T
Q  199 gtttgtaccctgttggaaactattcaaagttctgaagtttcttttgtttttcaggttcttaggggcata 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25259208 gtttgtaccctgttggaaactattcaaagttctgaagtttcttttgtttttcaggttcttaggggcata 25259140  T

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Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 267
Target Start/End: Complemental strand, 25323198 - 25322930
Alignment:
Q  10 attatactagaccatacttaacgaagaggaactgttaactagaattgtatcttgattttttcaaaataaaacttgannnnnnn---caatgttaaattag 106  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||    
T  25323198 attatactagaccatacttaacaaagaggaactattaactagaattgtatcttgattttttcaaaataaaacttgataatttttttcaatgttaaattag 25323099  T
Q  107 atatggtttctaaaggactttggaatttagttgttattagaatctaatattttgaataaactcacagtattaaaagtatcattc--------gnnnnnnn 198  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |           
T  25323098 atatagtttctaaaggactttggaatttagttgttattagaatctaatattttgaataaactcacagtattaaaagtatcattcgtttttttgttttttg 25322999  T
Q  199 gtttgtaccctgttggaaactattcaaagttctgaagtttcttttgtttttcaggttcttaggggcata 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25322998 gtttgtaccctgttggaaactattcaaagttctgaagtttcttttgtttttcaggttcttaggggcata 25322930  T

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