View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1492_low_49 (Length: 268)

Name: NF1492_low_49
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1492_low_49
NF1492_low_49
[»] chr3 (4 HSPs)
chr3 (86-255)||(49222955-49223126)
chr3 (17-57)||(49222873-49222913)
chr3 (18-57)||(49222768-49222807)
chr3 (152-223)||(17588355-17588427)
[»] chr6 (3 HSPs)
chr6 (171-228)||(20208107-20208164)
chr6 (171-228)||(22102130-22102187)
chr6 (171-227)||(31971518-31971574)
[»] chr4 (2 HSPs)
chr4 (155-226)||(56497607-56497679)
chr4 (171-219)||(28703181-28703229)
[»] chr8 (1 HSPs)
chr8 (157-222)||(7679896-7679962)
[»] chr2 (1 HSPs)
chr2 (155-200)||(21258632-21258678)
[»] chr1 (2 HSPs)
chr1 (150-223)||(16580793-16580867)
chr1 (184-217)||(6342441-6342474)
[»] chr7 (1 HSPs)
chr7 (155-219)||(2962725-2962790)
[»] chr5 (1 HSPs)
chr5 (171-215)||(5246172-5246216)


Alignment Details
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 86 - 255
Target Start/End: Original strand, 49222955 - 49223126
Alignment:
Q  86 caaggtcaccaacaaaattcacacatattaaatgtagagtaaaaaa-cattgtggannnnnnnn-atggttgggattcgaaccccatccttgcatatacc 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |         ||||| ||||||||||||||| |||||||||||      
T  49222955 caaggtcaccaacaaaattcacacatattaaatgtagagtaaaaaaacattgtgaatttttttttatggtcgggattcgaaccccaaccttgcatatatt 49223054  T
Q  184 atgcattgtctttaccaattgaattaagtttacggggacaaaacattgtggatttgaaattgcattcgagta 255  Q
    ||||||| | |||| ||| |||||||||||||||| || |||||| ||||||||| ||||||| ||||||||    
T  49223055 atgcattatttttatcaactgaattaagtttacggagataaaacaatgtggatttaaaattgcgttcgagta 49223126  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 49222873 - 49222913
Alignment:
Q  17 caaacatgtgtatctgctcacgaaatattatttttattaga 57  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  49222873 caaacatgtgtatctgctcacgaaatattatttttattaga 49222913  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 49222768 - 49222807
Alignment:
Q  18 aaacatgtgtatctgctcacgaaatattatttttattaga 57  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  49222768 aaacatgtgtctctgctcacgaaatattatttttattaga 49222807  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 17588427 - 17588355
Alignment:
Q  152 gttgggattcgaacccca-tccttgcatataccatgcattgtctttaccaattgaattaagtttacggggaca 223  Q
    ||||||||||||||||||   ||||||||||  |||||||||| ||||||| ||| ||||| | |||||||||    
T  17588427 gttgggattcgaaccccagatcttgcatatattatgcattgtccttaccaactgagttaagctcacggggaca 17588355  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 20208164 - 20208107
Alignment:
Q  171 ccttgcatataccatgcattgtctttaccaattgaattaagtttacggggacaaaaca 228  Q
    |||||||||||| ||||| |||| ||||||| ||| ||||||||||| ||||||||||    
T  20208164 ccttgcatatactatgcaatgtccttaccaactgagttaagtttacgcggacaaaaca 20208107  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 22102187 - 22102130
Alignment:
Q  171 ccttgcatataccatgcattgtctttaccaattgaattaagtttacggggacaaaaca 228  Q
    |||||||||||| ||||| |||| ||||||| ||| ||||||||||| ||||||||||    
T  22102187 ccttgcatatactatgcaatgtccttaccaactgagttaagtttacgcggacaaaaca 22102130  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 31971574 - 31971518
Alignment:
Q  171 ccttgcatataccatgcattgtctttaccaattgaattaagtttacggggacaaaac 227  Q
    |||||||||||  |||||||||| ||||||| ||| ||||| ||||| |||||||||    
T  31971574 ccttgcatatattatgcattgtccttaccaactgagttaagcttacgaggacaaaac 31971518  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 56497607 - 56497679
Alignment:
Q  155 gggattcgaaccccat-ccttgcatataccatgcattgtctttaccaattgaattaagtttacggggacaaaa 226  Q
    |||||||||||||||  |||||||||||  |||||||||| |||||||||||  |||| | ||||||||||||    
T  56497607 gggattcgaaccccagaccttgcatatattatgcattgtccttaccaattgagctaagctcacggggacaaaa 56497679  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 28703229 - 28703181
Alignment:
Q  171 ccttgcatataccatgcattgtctttaccaattgaattaagtttacggg 219  Q
    |||| ||||||| |||||||||||||||||| | ||||||||| |||||    
T  28703229 ccttacatatactatgcattgtctttaccaactaaattaagttcacggg 28703181  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 7679962 - 7679896
Alignment:
Q  157 gattcgaacccc-atccttgcatataccatgcattgtctttaccaattgaattaagtttacggggac 222  Q
    |||||||||||| | |||||||||||  ||||||||||||| |||| ||| ||||| ||||||||||    
T  7679962 gattcgaaccccgaaccttgcatatattatgcattgtctttgccaactgagttaagcttacggggac 7679896  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 21258678 - 21258632
Alignment:
Q  155 gggattcgaaccccat-ccttgcatataccatgcattgtctttacca 200  Q
    |||||||||||||||  ||||||||||| ||||||||||||||||||    
T  21258678 gggattcgaaccccagaccttgcatatatcatgcattgtctttacca 21258632  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 16580793 - 16580867
Alignment:
Q  150 tggttgggattcgaaccccat-ccttgcatataccatgcattgtctttaccaattgaattaagtttacggggaca 223  Q
    ||||||||||||||||||||  |||||||||||  || |||||||  |||||| ||||||||| | |||||||||    
T  16580793 tggttgggattcgaaccccagaccttgcatatattatacattgtccataccaactgaattaagctcacggggaca 16580867  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 6342441 - 6342474
Alignment:
Q  184 atgcattgtctttaccaattgaattaagtttacg 217  Q
    |||||||||||||||||| |||||||||||||||    
T  6342441 atgcattgtctttaccaactgaattaagtttacg 6342474  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 2962725 - 2962790
Alignment:
Q  155 gggattcgaacccc-atccttgcatataccatgcattgtctttaccaattgaattaagtttacggg 219  Q
    ||||||| |||||| | |||||||||||  ||||||| ||||||||||||||| |||||| |||||    
T  2962725 gggattcaaaccccgaaccttgcatatattatgcattatctttaccaattgaactaagttcacggg 2962790  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 5246172 - 5246216
Alignment:
Q  171 ccttgcatataccatgcattgtctttaccaattgaattaagttta 215  Q
    |||||||||||  ||||||||||| |||||||||| |||||||||    
T  5246172 ccttgcatatattatgcattgtctataccaattgagttaagttta 5246216  T

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