View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1492_low_52 (Length: 254)
Name: NF1492_low_52
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_low_52 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 234
Target Start/End: Complemental strand, 38356607 - 38356378
Alignment:
| Q |
4 |
atcaacacctttctttgcatccatctcaaaatctacatttgaaagctggagctcatgtatccaatgaattgttggtagcagacccaacgcttcccttatc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38356607 |
atcaacacctttctttgcatccatctcaaa-tctacatttgaaagttgtagctcatgtatccaatgaattgttggtagcagacccaacgcttcccctatc |
38356509 |
T |
|
| Q |
104 |
tccgatgcacatatgggattagtccacaatgtctccgccttaatgaagtttccagcagcatcccggatgcataacccaacaccaacacgatttaaaactt |
203 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38356508 |
tccggtgcacatatgggattagtccacaatgtctttgccttaatgaagtttccagcagcattccggatgcataacccaacaccaacacgatttaaaactt |
38356409 |
T |
|
| Q |
204 |
ccgaaaacgccgcatctatattgtacttaag |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
38356408 |
ccgaaaacgccgcatctatattgtacttaag |
38356378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 27039949 - 27040145
Alignment:
| Q |
20 |
gcatccatctcaaaatctacatttgaaagctggagctcatgtatccaatgaattgttggtagcagacccaacgcttcccttatctccgatgcacatatgg |
119 |
Q |
| |
|
||||||||||||||||||||||||| ||| || || || | || ||| ||||||| ||||||||||| ||||||| ||||||| |||||||| |
|
|
| T |
27039949 |
gcatccatctcaaaatctacatttgtaagttgtagttcgtatacccattgaattgcatagagcagacccaatgcttccccaatctccggcctacatatgg |
27040048 |
T |
|
| Q |
120 |
gattagtccacaatgtctccgccttaatgaagtttccagcagcatcccggatgcataacccaacaccaacacgatttaaaacttccgaaaacgccgc |
216 |
Q |
| |
|
|||||| ||||| ||| ||||| |||| || |||||||||||||| || || ||||||| ||||||| |||||||| |||||||||||||||| |
|
|
| T |
27040049 |
gattagaccacatcatctttgccttcctgaaattaccagcagcatcccgtatacacaacccaaaaccaacatgatttaaatcttccgaaaacgccgc |
27040145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 14489625 - 14489685
Alignment:
| Q |
155 |
ccagcagcatcccggatgcataacccaacaccaacacgatttaaaacttccgaaaacgccg |
215 |
Q |
| |
|
|||||||||||||| || || | || || ||||||||||||| || ||||||||||||||| |
|
|
| T |
14489625 |
ccagcagcatcccgtatacacagcctaaaaccaacacgatttgaatcttccgaaaacgccg |
14489685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 30273853 - 30274065
Alignment:
| Q |
12 |
ctttctttgcatccatctcaaaatctacatttgaaagctggagctcatgtatccaatgaattgttggtagcagacccaacgcttcccttatctccgatgc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| || || ||||| | ||||||||||| | ||||| ||||||||||||| ||||||| || |
|
|
| T |
30273853 |
ctttctttgcatccatctcaaaatctacatttaaaaattgtagttcatgcacccaatgaattgcatggagcagtcccaacgcttccccaatctccggtgt |
30273952 |
T |
|
| Q |
112 |
acatatgggattagtccacaatgtctccgccttaatgaagtttccagcagcatcccggatgcataacccaacaccaacacgatttaaaacttccgaaaac |
211 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| | || ||||||||||||||||| |||||| | ||||||||||||| |||||| ||||||||||| |
|
|
| T |
30273953 |
acatatgggattagtccacaacatctttgcctt-ttaaaatttccagcagcatcccgtttgcatagctcaacaccaacacggtttaaagcttccgaaaac |
30274051 |
T |
|
| Q |
212 |
gccgcatctatatt |
225 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
30274052 |
gccccatctatatt |
30274065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 27804859 - 27804891
Alignment:
| Q |
12 |
ctttctttgcatccatctcaaaatctacatttg |
44 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
27804859 |
ctttctttgcatccatctcaaaatctacatttg |
27804891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 14150481 - 14150513
Alignment:
| Q |
12 |
ctttctttgcatccatctcaaaatctacatttg |
44 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
14150481 |
ctttctttgcatccatctcaaaatctacatttg |
14150513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 3214968 - 3214936
Alignment:
| Q |
12 |
ctttctttgcatccatctcaaaatctacatttg |
44 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
3214968 |
ctttctttgcatccatctcaaaatctacatttg |
3214936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University