View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1492_low_53 (Length: 252)

Name: NF1492_low_53
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1492_low_53
NF1492_low_53
[»] chr5 (10 HSPs)
chr5 (10-234)||(3215689-3215913)
chr5 (37-232)||(3219197-3219392)
chr5 (25-234)||(3207753-3207962)
chr5 (25-234)||(3201779-3201988)
chr5 (37-164)||(3224189-3224317)
chr5 (43-144)||(3179008-3179109)
chr5 (43-144)||(3239731-3239832)
chr5 (32-143)||(3230933-3231044)
chr5 (32-143)||(3220700-3220811)
chr5 (32-143)||(3225685-3225796)
[»] chr1 (2 HSPs)
chr1 (112-148)||(46215262-46215298)
chr1 (93-144)||(139416-139467)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 3215913 - 3215689
Alignment:
Q  10 aatataccaccatacaacatcatttcaggtacctcaatgtcttgtccacatctcagcggaattgctgctctgttgaaaaactctcatccagattggtctc 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3215913 aatataccaccatacaacatcatttcaggtacctcaatgtcttgtccacatctcagtggaattgctgctctgttgaaaaactctcatccagattggtctc 3215814  T
Q  110 ccgctgctataaaatcagcaatcatgacaactgcttatgaagttaatcttcaaggaaaagctattttggaccaaagacttaaaccagctgatttatttgc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3215813 ccgctgctataaaatcagcaatcatgacaactgcttatgaagttaatcttcaaggaaaagctattttggaccaaagacttaaaccagctgatttatttgc 3215714  T
Q  210 cactggtgctggacatgtcaaccct 234  Q
    |||||||||||||||||||||||||    
T  3215713 cactggtgctggacatgtcaaccct 3215689  T

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Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 37 - 232
Target Start/End: Complemental strand, 3219392 - 3219197
Alignment:
Q  37 ggtacctcaatgtcttgtccacatctcagcggaattgctgctctgttgaaaaactctcatccagattggtctcccgctgctataaaatcagcaatcatga 136  Q
    ||||||||||||||||||   |||||||  |||||||| || ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  3219392 ggtacctcaatgtcttgttttcatctcaatggaattgcagcactgttgaaaaattctcatccagatcggtctcccgctgctataaaatcagcaatcatga 3219293  T
Q  137 caactgcttatgaagttaatcttcaaggaaaagctattttggaccaaagacttaaaccagctgatttatttgccactggtgctggacatgtcaacc 232  Q
    |||||||||||||  ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  3219292 caactgcttatgagtttaatcttcaaggaaaagctattttagaccaaaggcttaaaccagctgatttatttgccactggtgctggatatgtcaacc 3219197  T

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Target: chr5; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 25 - 234
Target Start/End: Complemental strand, 3207962 - 3207753
Alignment:
Q  25 aacatcatttcaggtacctcaatgtcttgtccacatctcagcggaattgctgctctgttgaaaaactctcatccagattggtctcccgctgctataaaat 124  Q
    ||||| |||||||||||||||||||| ||||| ||||| || || ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  3207962 aacataatttcaggtacctcaatgtcatgtcctcatcttagtggcattgctgctttgttgaaaaactctcatccagattggtctccagctgctataaaat 3207863  T
Q  125 cagcaatcatgacaactgcttatgaagttaatcttcaaggaaaagctattttggaccaaagacttaaaccagctgatttatttgccactggtgctggaca 224  Q
    | |||||||||||||||||| || | |||||||||||||| ||  ||||||||||||||||| ||  |||||||||| ||||||||||||||||||||||    
T  3207862 ccgcaatcatgacaactgctaatcaggttaatcttcaaggtaagcctattttggaccaaagaattctaccagctgatgtatttgccactggtgctggaca 3207763  T
Q  225 tgtcaaccct 234  Q
    ||||||||||    
T  3207762 tgtcaaccct 3207753  T

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Target: chr5; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 25 - 234
Target Start/End: Complemental strand, 3201988 - 3201779
Alignment:
Q  25 aacatcatttcaggtacctcaatgtcttgtccacatctcagcggaattgctgctctgttgaaaaactctcatccagattggtctcccgctgctataaaat 124  Q
    ||||| ||| |||||||||| ||||||||||| ||||| || || ||||||||| ||||||||||||| |||||||||||||| || || ||||||||||    
T  3201988 aacataattgcaggtacctcgatgtcttgtcctcatcttagtggcattgctgctttgttgaaaaactcgcatccagattggtcaccagcagctataaaat 3201889  T
Q  125 cagcaatcatgacaactgcttatgaagttaatcttcaaggaaaagctattttggaccaaagacttaaaccagctgatttatttgccactggtgctggaca 224  Q
    ||||||||||||| |||||| || | |||||||| || || ||  |||||||||||||||| |||  |||||||||| ||||||||||||||||||||||    
T  3201888 cagcaatcatgacgactgctaatcatgttaatctccatggtaagcctattttggaccaaaggcttctaccagctgatgtatttgccactggtgctggaca 3201789  T
Q  225 tgtcaaccct 234  Q
    ||| ||||||    
T  3201788 tgttaaccct 3201779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 37 - 164
Target Start/End: Complemental strand, 3224317 - 3224189
Alignment:
Q  37 ggtacctcaatgtcttgtccacatctcagcggaattgctgctctgttga-aaaactctcatccagattggtctcccgctgctataaaatcagcaatcatg 135  Q
    |||||||||||||||||| | |||||||| |||||||| |  ||||||| |||||| |||||||||||||||||   ||||||||||||| |||||||||    
T  3224317 ggtacctcaatgtcttgttctcatctcagtggaattgcagtactgttgataaaactatcatccagattggtctctgtctgctataaaatcggcaatcatg 3224218  T
Q  136 acaactgcttatgaagttaatcttcaagg 164  Q
    |||||||| ||||| ||||||||||||||    
T  3224217 acaactgcatatgaggttaatcttcaagg 3224189  T

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Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 3179008 - 3179109
Alignment:
Q  43 tcaatgtcttgtccacatctcagcggaattgctgctctgttgaaaaactctcatccagattggtctcccgctgctataaaatcagcaatcatgacaactg 142  Q
    |||||||||||||| |||||||| || ||||||||  || | ||||  |||||||| |||||||| || ||||| |||||||||||||||||||||||||    
T  3179008 tcaatgtcttgtcctcatctcagtggcattgctgcattgatcaaaagttctcatcctgattggtcgccagctgcaataaaatcagcaatcatgacaactg 3179107  T
Q  143 ct 144  Q
    ||    
T  3179108 ct 3179109  T

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Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 3239832 - 3239731
Alignment:
Q  43 tcaatgtcttgtccacatctcagcggaattgctgctctgttgaaaaactctcatccagattggtctcccgctgctataaaatcagcaatcatgacaactg 142  Q
    |||||||||||||| |||||||| || ||||||||  || | ||||  |||||||| |||||||| || ||||| |||||||||||||||||||||||||    
T  3239832 tcaatgtcttgtcctcatctcagtggcattgctgcattgatcaaaagttctcatcctgattggtcgccagctgcaataaaatcagcaatcatgacaactg 3239733  T
Q  143 ct 144  Q
    ||    
T  3239732 ct 3239731  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 143
Target Start/End: Complemental strand, 3231044 - 3230933
Alignment:
Q  32 tttcaggtacctcaatgtcttgtccacatctcagcggaattgctgctctgttgaaaaactctcatccagattggtctcccgctgctataaaatcagcaat 131  Q
    |||| ||||| |||||||||||||| || || || || ||||||||  || | ||||  ||||| || |||||||| || || |||||||||||||||||    
T  3231044 tttccggtacttcaatgtcttgtcctcacctaagtggtattgctgcattgatcaaaagttctcaccctgattggtcgccagccgctataaaatcagcaat 3230945  T
Q  132 catgacaactgc 143  Q
    ||||||||||||    
T  3230944 catgacaactgc 3230933  T

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Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 143
Target Start/End: Complemental strand, 3220811 - 3220700
Alignment:
Q  32 tttcaggtacctcaatgtcttgtccacatctcagcggaattgctgctctgttgaaaaactctcatccagattggtctcccgctgctataaaatcagcaat 131  Q
    |||| ||||| |||||||||||||| || || || || ||| ||||  || | ||||  ||||| || |||||||| || || |||||||||||||||||    
T  3220811 tttccggtacttcaatgtcttgtcctcacctaagtggtatttctgcattgatcaaaagttctcaccctgattggtcaccagccgctataaaatcagcaat 3220712  T
Q  132 catgacaactgc 143  Q
    ||||||||||||    
T  3220711 catgacaactgc 3220700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 143
Target Start/End: Complemental strand, 3225796 - 3225685
Alignment:
Q  32 tttcaggtacctcaatgtcttgtccacatctcagcggaattgctgctctgttgaaaaactctcatccagattggtctcccgctgctataaaatcagcaat 131  Q
    |||| ||||| || ||||||||||| || || || || ||||||||  || | ||||  |||||||| |||||||| || || ||||||||||| |||||    
T  3225796 tttcgggtacttcgatgtcttgtcctcacctaagtggtattgctgcattgatcaaaagttctcatcctgattggtcaccagccgctataaaatcggcaat 3225697  T
Q  132 catgacaactgc 143  Q
    ||||||||||||    
T  3225696 catgacaactgc 3225685  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 46215262 - 46215298
Alignment:
Q  112 gctgctataaaatcagcaatcatgacaactgcttatg 148  Q
    ||||||||||||||||||||||||||||| |||||||    
T  46215262 gctgctataaaatcagcaatcatgacaacagcttatg 46215298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 139467 - 139416
Alignment:
Q  93 tcatccagattggtctcccgctgctataaaatcagcaatcatgacaactgct 144  Q
    ||||||||||||||| || || ||||||||||| || |||||||||||||||    
T  139467 tcatccagattggtcacctgcagctataaaatccgctatcatgacaactgct 139416  T

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