View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1492_low_54 (Length: 251)
Name: NF1492_low_54
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_low_54 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 25258893 - 25259125
Alignment:
| Q |
19 |
cctcgtaccttgcaactgtgtctgatgttactggacagcggtaaaccaaaccatttaacaagattgtgagcagcattgaactaatgttcctcattgcgta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25258893 |
cctcgtaccttgcaactgtgtctgatgttactggacaacggtaaaccaaaccatgtaacaagattgtgagcagcattgaactaatgttcctcattgcgta |
25258992 |
T |
|
| Q |
119 |
taaaactcctctgaacccgttgaaaccgtttagctttgattcgacggatactctttcgtcgaaacacagagaaagtagttggactcttgtttccatcaat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25258993 |
taaaactcctctgaacccgttgaaaccgtttagctttgattcgacggatactctttcgtcgaaacacagagaaagtagttggactcttgtttccatcaat |
25259092 |
T |
|
| Q |
219 |
gaacggttttcttcttccaatcccattgcttct |
251 |
Q |
| |
|
| |||||||||||||||||||||||| |||||| |
|
|
| T |
25259093 |
gcacggttttcttcttccaatcccatagcttct |
25259125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 25322683 - 25322915
Alignment:
| Q |
19 |
cctcgtaccttgcaactgtgtctgatgttactggacagcggtaaaccaaaccatttaacaagattgtgagcagcattgaactaatgttcctcattgcgta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25322683 |
cctcgtaccttgcaactgtgtctgatgttactggacaacggtaaaccaaaccatgtaacaagattgtgagcagcattgaactaatgttcctcattgcgta |
25322782 |
T |
|
| Q |
119 |
taaaactcctctgaacccgttgaaaccgtttagctttgattcgacggatactctttcgtcgaaacacagagaaagtagttggactcttgtttccatcaat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25322783 |
taaaactcctctgaacccgttgaaaccgtttagctttgattcgacggatactctttcgtcgaaacacagagaaagtagttggactcttgtttccatcaat |
25322882 |
T |
|
| Q |
219 |
gaacggttttcttcttccaatcccattgcttct |
251 |
Q |
| |
|
| |||||||||||||||||||||||| |||||| |
|
|
| T |
25322883 |
gcacggttttcttcttccaatcccatagcttct |
25322915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 33137249 - 33137301
Alignment:
| Q |
108 |
ctcattgcgtataaaactcctctgaacccgttgaaaccgtttagctttgattc |
160 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |
|
|
| T |
33137249 |
ctcattgcgtataaaacacctctgaaaccgttgaaaccgtttagttttgattc |
33137301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University