View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_low_55 (Length: 250)
Name: NF1492_low_55
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_low_55 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0086 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 44314848 - 44314609
Alignment:
| Q |
11 |
cacagaaagcaactgaattcaatttaacagaatgaaatgacatgactgaaccaaagcttttcagcaatgtttattctaggtgccatactaaaaagcaaac |
110 |
Q |
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| T |
44314848 |
cacagaaagcaactgaattcaatttaacaaaatgaaatgacatgactgaaccaaagcttttcagcaatgtttattctaggtgccatactaataagcaaaa |
44314749 |
T |
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| Q |
111 |
gaaaatctgatccctctaaagaaggaacctaattatgcataacttcagcaatgttaagtacaaacagacccttgtcacaataacctttccccacaaatac |
210 |
Q |
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| T |
44314748 |
gaaaatctgatccctctaaagaaggaacctaattatgcataacttcagcaatgtttagtacaaacagacccttgtcacaataacctttccccacaaatac |
44314649 |
T |
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| Q |
211 |
attatcttttgtcattacaatcttgtcagattcaaatgac |
250 |
Q |
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| T |
44314648 |
attatcttttgtcattacaatcttgtcagattcaaatgac |
44314609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 34098044 - 34098283
Alignment:
| Q |
11 |
cacagaaagcaactgaattcaatttaacagaatgaaatgacatgactgaaccaaagcttttcagcaatgtttattctaggtgccatactaaaaagcaaac |
110 |
Q |
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| T |
34098044 |
cacagaaagcaactgaattcaatttaacaaaatgaaatgacatgactgaaccaaagcttttcagcaatgtttattctaggtgccatactaataagcaaaa |
34098143 |
T |
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| Q |
111 |
gaaaatctgatccctctaaagaaggaacctaattatgcataacttcagcaatgttaagtacaaacagacccttgtcacaataacctttccccacaaatac |
210 |
Q |
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| T |
34098144 |
gaaaatctgatccctctaaagaaggaacctaattatgcataacttcagcaatgtttagtacaaacagacccttgtcacaataacctttccccacaaatac |
34098243 |
T |
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| Q |
211 |
attatcttttgtcattacaatcttgtcagattcaaatgac |
250 |
Q |
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| T |
34098244 |
attatcttttgtcattacaatcttgtcagattcaaatgac |
34098283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 26 - 250
Target Start/End: Original strand, 39739 - 39963
Alignment:
| Q |
26 |
aattcaatttaacagaatgaaatgacatgactgaaccaaagcttttcagcaatgtttattctaggtgccatactaaaaagcaaacgaaaatctgatccct |
125 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| || |||||| |
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| T |
39739 |
aattcaatttaatagaatgaaatgacatgactgaaccaaagcttttcagcaatgtttattctaggtgacatactaataagcaaaagaaaacctaatccct |
39838 |
T |
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| Q |
126 |
ctaaagaaggaacctaattatgcataacttcagcaatgttaagtacaaacagacccttgtcacaataacctttccccacaaatacattatcttttgtcat |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839 |
ctaaagaaggaacctaattatgcataacttcagcaatgtttagtacaaacagacccttgtcacaataacctttccccacaaatacattatcttttgtcat |
39938 |
T |
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| Q |
226 |
tacaatcttgtcagattcaaatgac |
250 |
Q |
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| T |
39939 |
tacaatcttgttagactcaaatgac |
39963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 19430397 - 19430301
Alignment:
| Q |
154 |
ttcagcaatgttaagtacaaacagacccttgtcacaataacctttccccacaaatacattatcttttgtcattacaatcttgtcagattcaaatgac |
250 |
Q |
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||||| ||| ||||||||||| || || | ||| |||| ||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||| |
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| T |
19430397 |
ttcagaaatattaagtacaaagagtccttgatcaaaatagccttttcccacaaatttatttttctttgtcattacaatcttgtcagattcaaatgac |
19430301 |
T |
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