View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_low_56 (Length: 249)
Name: NF1492_low_56
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 3 - 232
Target Start/End: Complemental strand, 29847899 - 29847670
Alignment:
| Q |
3 |
gatgtcgaagaatatagcatcaactttccaccattgttatcaacattgattgattcattgaaagtgcagttaacaatcacaacagtataaacatggccat |
102 |
Q |
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| T |
29847899 |
gatgtagaagcatatagcatcaactttccaccactgttatcaacattgattgattcattgaaagtgcagttaacaatcacaacggtataaacatggccat |
29847800 |
T |
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| Q |
103 |
agccccaatcagggagcatcttgtaaccaatggtggtgatgttttttgaagagtttgtgtttgtgttagtgttagggatccactcacattcataagtagg |
202 |
Q |
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| T |
29847799 |
agccccaatcagggagcatcttgtaaccaatggtggtgatgttttttgaagagtttgtgtttgtgttagtgttagggatccactcacattcataagtagg |
29847700 |
T |
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| Q |
203 |
atttccataaacatgaagaggctttgaaga |
232 |
Q |
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| T |
29847699 |
atttccataaacatgaagaggctttgaaga |
29847670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 14831039 - 14831107
Alignment:
| Q |
62 |
gaaagtgcagttaacaatcacaacagtataaacatggccatagccccaatcagggagcatcttgtaacc |
130 |
Q |
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| T |
14831039 |
gaaagtacagttaacgattacgaccgtgtaaacacggccgtagccccagtcagggaggatcttgtaacc |
14831107 |
T |
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