View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_low_6 (Length: 664)
Name: NF1492_low_6
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 356 - 642
Target Start/End: Complemental strand, 41546958 - 41546672
Alignment:
| Q |
356 |
agggtttgtatcatattatgtaggtgtgtatttacactgtttttatacattattttagactagggtgttatttaattgacccaaatatcttagctgatat |
455 |
Q |
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| T |
41546958 |
agggtttgtatcatattatgtaggtgtgtatttacactgtttttatacattattttagactagggtgttatttaattgaccctaatatcttagctgatat |
41546859 |
T |
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| Q |
456 |
tatgtttgaagatgatgtgcttgaaatgttatctcaaaaactgcattgttctgcaccagttggtcatgtcgaagtacctgcaccaattgtagcaccttct |
555 |
Q |
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| T |
41546858 |
tatgtttgaagatgatgtgcttgaaatgttatctcaaaaactgcattgttctgcaccagttggtcatgtcgaagtacctgcaccaattgtagcaccttct |
41546759 |
T |
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| Q |
556 |
gcaagtcaggttgatcctgttgcaaatgcaccagttgcaataccttatgtgcctgatcctacaaatgtaagtatttaagcatttgcc |
642 |
Q |
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| T |
41546758 |
gcaagtcaggttgatcctgttgcaaatgcaccagttgcaataccttatgtgcctgatcctacaaatgtaagtatttaagcatttgcc |
41546672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 10 - 254
Target Start/End: Complemental strand, 41547304 - 41547060
Alignment:
| Q |
10 |
catcatcaggtatggaattgagttcaatatgtgtgatcaaataaatgtttggttagattgctaggtaggtagcttggcctggaacgtgattttcctgttt |
109 |
Q |
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| T |
41547304 |
catcatcaggtatggaattgagttcaatatgtgtgatcaaataaatgtttggttagattgctaggtaggtagcttggcctggaacgtgattttcctgttt |
41547205 |
T |
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| Q |
110 |
tattgaagcatgtagtaggcagtattttataatttctttgaacttgtgaggctactagtaatggaacaagacctcattgatgaaatcatatatactccaa |
209 |
Q |
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| T |
41547204 |
tattgaagcatgtagtaggcagtattttataatttctttgaacttgtgaggctactagtaatggaacaagacctcattgatgaaatcatatatactccaa |
41547105 |
T |
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| Q |
210 |
ggttaaattagtaagtggtccctataatttctttacactatattg |
254 |
Q |
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| T |
41547104 |
ggttaaattagtaagtggtccctataatttctttacactatattg |
41547060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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