View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1492_low_60 (Length: 243)

Name: NF1492_low_60
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1492_low_60
NF1492_low_60
[»] chr1 (7 HSPs)
chr1 (6-225)||(47712426-47712645)
chr1 (127-225)||(47744955-47745054)
chr1 (6-92)||(47717338-47717427)
chr1 (6-92)||(47759454-47759543)
chr1 (13-92)||(47745128-47745213)
chr1 (127-222)||(47717166-47717262)
chr1 (138-225)||(47759273-47759360)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 6 - 225
Target Start/End: Complemental strand, 47712645 - 47712426
Alignment:
Q  6 actaccgtcgccatagttgtgccaactgctgttgttgttgctgccctgctaattttcatttgcatatgcttaaggaaaaggaaggcagcgacgataaatc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47712645 actaccgtcgccatagttgtgccaactgctgttgttgttgctgccctgctaattttcatttgcatatgcttaaggaaaaggaaggcagcgacgataaatc 47712546  T
Q  106 ttggaggtatgaacagaatacttttgaagacataaaatctacttcatataataataagttgtgatggttaacattttgcattcaaatagagaaaacctag 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47712545 ttggaggtatgaacagaatacttttgaagacataaaatctacttcatataataataagttgtgatggttaacattttgcattcaaatagagaaaacctag 47712446  T
Q  206 atgcaataattcaaaaatag 225  Q
    ||||||||||||||||||||    
T  47712445 atgcaataattcaaaaatag 47712426  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 127 - 225
Target Start/End: Complemental strand, 47745054 - 47744955
Alignment:
Q  127 ttttgaagacataaaatctacttcatataataataagttgtgatggttaaca---ttttgcattcaaatagagaaaacctagatgcaataattcaaaaat 223  Q
    |||||| ||||||||||||||||||||  |||||||||||||||||||||||   ||||||||||||| |||||||||||||||||| ||||||||||||    
T  47745054 ttttgacgacataaaatctacttcata--ataataagttgtgatggttaacaaagttttgcattcaaaaagagaaaacctagatgcagtaattcaaaaat 47744957  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 47717427 - 47717338
Alignment:
Q  6 actaccgtcgccatagttgtgccaactgctgt---tgttgttgctgccctgctaattttcatttgcatatgcttaaggaaaaggaaggca 92  Q
    |||||| |||||||||||||||| |||| |||   |||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  47717427 actaccatcgccatagttgtgccgactgttgtggttgttgttgcttccctgctaattttcatttgcatatgcgtaaggaaaaggaaggca 47717338  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 47759543 - 47759454
Alignment:
Q  6 actaccgtcgccatagttgtgccaactgctgttgttgttgctgcc---ctgctaattttcatttgcatatgcttaaggaaaaggaaggca 92  Q
    |||||| |||||||||||||||| |||| ||||||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||    
T  47759543 actaccatcgccatagttgtgccgactgttgttgttgttgttgccgccctgctaatttttatttgcatatgcttaaggaaaaggaaggca 47759454  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 47745213 - 47745128
Alignment:
Q  13 tcgccatagttgtgccaactgctgttgttgttgctgc------cctgctaattttcatttgcatatgcttaaggaaaaggaaggca 92  Q
    |||||| ||||||||| |||| |||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||    
T  47745213 tcgccacagttgtgccgactgttgttgttgttgctgctgctggcctgctaattttcatttgcatatgcttaaggaaaaggaaggca 47745128  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 47717262 - 47717166
Alignment:
Q  127 ttttgaagacataaaatctacttcatataataataagttgtgatggttaaca---ttttgcattcaaatagagaaaacctagatgcaataattcaaaaa 222  Q
    |||||| |||||||||| |||||||||  |||||||||||||||||||||||   ||||||||||||||||||| |||||||| ||| |||||| ||||    
T  47717262 ttttgacgacataaaatttacttcata--ataataagttgtgatggttaacagagttttgcattcaaatagagacaacctagaagcagtaattccaaaa 47717166  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 225
Target Start/End: Complemental strand, 47759360 - 47759273
Alignment:
Q  138 taaaatctacttcatataataataagttgtgatggttaaca---ttttgcattcaaatagagaaaacctagatgcaataattcaaaaatag 225  Q
    ||||||||||||||||  ||| |||||||| ||||||||||   ||||||||||||||| | ||||| |||||| | ||||||||||||||    
T  47759360 taaaatctacttcata--atattaagttgtaatggttaacaaagttttgcattcaaataaaaaaaac-tagatgtagtaattcaaaaatag 47759273  T

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