View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_low_61 (Length: 243)
Name: NF1492_low_61
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_low_61 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 38865819 - 38865584
Alignment:
| Q |
11 |
cacagactgcagtattctcggcttatatggcctggtgagcctagcacactgaaccatcacnnnnnnnnnnnnnngctttgtccctctctc--tctcacat |
108 |
Q |
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| T |
38865819 |
cacaggctgcagtattcttggcttatatggcctggtgagcctagcacactgaaccatcacttttttgtttttttgctttgtccctctctctctctctcat |
38865720 |
T |
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| Q |
109 |
catatttgaggcaaaataaaattttgctttgtgactttagtgtgctgagaggtctgttatctatatatatgttccaagtaattttgtattgcatctc-tt |
207 |
Q |
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| T |
38865719 |
catatttgaggcaaaataaaattttgctttgtgactttagtgtgctgagaggtctgttatctatatatatgttccaagtaattttgtattgcatctcttt |
38865620 |
T |
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| Q |
208 |
aagttttacagtttaaaattaggttttctattcacc |
243 |
Q |
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| T |
38865619 |
aagttttatagtttaaaattcggtttgctattcacc |
38865584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 38807745 - 38807803
Alignment:
| Q |
157 |
gaggtctgttatctatatatatgttccaagtaattttgtattgcatctcttaagtttta |
215 |
Q |
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| T |
38807745 |
gaggtctgttatcgacatatatgttccaagtaattatttattgcatctcttaagtttta |
38807803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 39310565 - 39310508
Alignment:
| Q |
11 |
cacagactgcagtattctcggcttatatggcctggtgagcctagcacactgaaccatca |
69 |
Q |
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| T |
39310565 |
cacaggctgcagtattctcagcccatatggcctggtgagcctagc-cattgaaccatca |
39310508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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