View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_low_66 (Length: 236)
Name: NF1492_low_66
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_low_66 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 43410216 - 43410432
Alignment:
| Q |
1 |
agattggctctttctatgccagcttcccagagttgagcactgcaactgctaatggtggtgatggtaatgataacaacaacaacaatagcttctataataa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
43410216 |
agattggctctttctatgccagcttcccagagttgagcaatgcaactgctaatggtggtgatggtaatgataacagcaac---aatagcttctataataa |
43410312 |
T |
|
| Q |
101 |
taaccatggagatggaatagttactagtttgaaatccccaccctctgcttgcagtcagacccatgcaggaaacaaattacctatgactactactactgcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43410313 |
taaccatggagatggaatagttactagtttgaaatccccaccctctgcttgcagtcagacccatgcaggaaacaaattacctatgactactactactgcc |
43410412 |
T |
|
| Q |
201 |
attaaccatcatcatgttgt |
220 |
Q |
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|||||||||||||||||||| |
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| T |
43410413 |
attaaccatcatcatgttgt |
43410432 |
T |
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