View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_low_70 (Length: 232)
Name: NF1492_low_70
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_low_70 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 722918 - 722698
Alignment:
| Q |
1 |
ttctcaagcattggtcaaacgttatgctaaacatgctagctgatgaagctgtcttcatccttgattgcattgtgagttctccataccctaatgattgtgt |
100 |
Q |
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| T |
722918 |
ttctcaagcattggtcaaacgttatgctaaacatgctagctgatgaagctgtcttcatccttgattgcattgtgagttctccataccctaatgattgtgt |
722819 |
T |
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| Q |
101 |
aagggaaaagaaattaccattgattcaacacatattgcaccacaatgcaacgttcgagtttttccatgaaaaacgcctcgaattgatcactgatgtcaca |
200 |
Q |
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| T |
722818 |
aagggaaaagaaattaccattgattcaacacatattgcaccacaatgcgacgttcgagtttttccatgaaaaacgcctcgaattgatcactgatgtcaca |
722719 |
T |
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| Q |
201 |
aagtacatcaatgaagtatgt |
221 |
Q |
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| T |
722718 |
aagtacatcaatgaagtatgt |
722698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 18331409 - 18331343
Alignment:
| Q |
156 |
gagtttttccatgaaaaacgcctcgaattgatcactgatgtcacaaagtacatcaatgaagtatgtg |
222 |
Q |
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| T |
18331409 |
gagtttttccatgaaaaacgcctcgaagtgatcactggtgtcaccaagatcatcaatgatgtatgtg |
18331343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 204
Target Start/End: Original strand, 17616343 - 17616490
Alignment:
| Q |
57 |
atccttgattgcattgtgagttctccataccctaatgattgtgtaagggaaaagaaattaccattgattcaacacatattgcaccacaatgcaacgttcg |
156 |
Q |
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| T |
17616343 |
atccttaattgcattgagagttctcgataccctaactcttttttaaggaaaaataagttgctattgattcaacaaatcatgcgtcgcaatgtgacttttg |
17616442 |
T |
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| Q |
157 |
agtttttccatgaaaaacgcctcgaattgatcactgatgtcacaaagt |
204 |
Q |
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| T |
17616443 |
aatttttccatgaaaaacgcctcgagctgatcattgatgtcacaaagt |
17616490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 46441239 - 46441304
Alignment:
| Q |
157 |
agtttttccatgaaaaacgcctcgaattgatcactgatgtcacaaagtacatcaatgaagtatgtg |
222 |
Q |
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| T |
46441239 |
agtttttccatgaaaaacgcctcgaagtgatcaatgacatcaccaagttcatcaatgatgtatgtg |
46441304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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